1FXT,1YLA,2F4Z,2PWQ


Conserved Protein Domain Family
UBCc_UBE2K

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cd23800: UBCc_UBE2K 
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 K and related proteins
The E2J subfamily includes mammalian ubiquitin-conjugating enzymes E2 K (UBE2K/HIP2/LIG), yeast ubiquitin-conjugating enzyme E2 1 (UBC1), and plant ubiquitin-conjugating enzyme E2 27 (UBC27). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2K is also called huntingtin-interacting protein 2 (HIP-2), ubiquitin-conjugating enzyme E2-25 kDa, or ubiquitin-conjugating enzyme E2(25K). In vitro, in the presence or absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, UBE2K catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. It does not transfer ubiquitin directly, but elongates monoubiquitinated substrate proteins. Saccharomyces cerevisiae UBC1, also called ubiquitin-conjugating enzyme E2-24 kDa, functions in the degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. It is a cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).
Statistics
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PSSM-Id: 467420
Aligned: 57 rows
Threshold Bit Score: 224.359
Created: 10-Aug-2017
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: active site cysteine [active site], 1 residue position
Conserved feature residue pattern:CClick to see conserved feature residue pattern help
Evidence:
  • Comment:forms a thioester with ubiquitin or ubiquitin-like proteins
  • Comment:serves as the point of attachment of ubiquitin prior to transfer to cellular target
  • Citation:PMID 9497353
  • Citation:PMID 9705497

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1FXT_A         3 AKRIMKEIQAVKDdp---aaHITLEFVSesdiHHLKGTFLGPPGTPyEGGKFVVDIEVPmeYPFKPPKMQFDtKVYHPNI 79  baker's yeast
Q9TZ69         6 FNRLQRECKEVVTnseisetGIMIEILNen-lTEIKGHIRGPPDTPyAGGMFDLDIKIPdqYPFSPPNVKFStKIWHPNV 84  Caenorhabditis ...
CBY13128       7 IARVQKELKDFQKkgg-dlvGIRLDLGDgsdmMKFVGSIDGPPDTVySGGHYKLLIEIPpnYPFSPPKIRFTtPIWHPNI 85  Oikopleura dioica
P52484        20 LARVTRKCKEVANasditeaGIHVEIKEnn-lMDIKGFIKGPEGTPyAGGTFEIKVDIPehYPFEPPKAKFVtRIWHPNI 98  Caenorhabditis ...
KJE96580      29 IARVKKEYVECQSdegmkscNIKLSLVEds-fVKLRGEIPGPLGTPfEGGVFQLLIDIPqnYPFNPPIVKFEtKVWHPNV 107 Capsaspora owcz...
CBK21720       3 IARVGKELERMAKdn---npDIGVIWIGsd-kRNLICFIRGPKDTIfEGAYFKLHCHIPdrYPFEPPVMIFMtKVWHPNI 78  Blastocystis ho...
XP_017487059  12 AKRIEKDLAKFKAdqa-aqaMYHIEPESeddiFQLKGYVYGPPDTPyQGGVFHLKMTVPndYPFRPPVCKMTtKVWHPNI 90  snowberry fruit...
GAV01272       8 FNRIQRELAEVAKasdaekgIVSLEAKDgr-lDHLTGVIKGPPSSPyEGGTYVLDIKIPpeYPFKPPEVKFAtKVWHPNV 86  Ramazzottius va...
KNE56815       4 TRRLQRELKEAASataadgsAIKLELVGtd-lTHMKGEIAGPAGTPyEGGRFVLDIKIPdtYPFAPPIIKFEtSVYHPNV 82  Allomyces macro...
XP_012896965   4 NTRIDVEVKKLSKdpe-devGIYRKFDGk---RSFYAFIRGPDDSPfEHGYFKLFVHLSpeYPFKPPVVKFMtPVYHPNI 79  Blastocystis ho...
Feature 1               #                                                           
1FXT_A        80 SsVTGAICLDILKNaWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLrdreSFNKTAALWTRL 146 baker's yeast
Q9TZ69        85 SsQTGVICLDILKDqWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMekpaVFKATAEYWTTK 151 Caenorhabditis elegans
CBY13128      86 SsVTGAICLDILSSkWAAAMTLRTVLLSIQALLESPEPDDPQDAVVAAQFNknraCWEATAKFWAQY 152 Oikopleura dioica
P52484        99 SsQTGTICLDILKDkWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFInnypMFTATAVYWTSY 165 Caenorhabditis elegans
KJE96580     108 SsQTGVICLDILKDqWAAAMTLRTVMLSIQALMSTPEPDDPQDAVVANQYRsnreEYNRTAKYWTDV 174 Capsaspora owczarzaki ATCC 3...
CBK21720      79 SsVTGAICLDILKSkWTPALNISIALLSIQALLTAAEPTDPQDHEVATQYLqsrgDYEAKAKEWVQK 145 Blastocystis hominis
XP_017487059  91 G-EAGSICLDTLSGkWTAAMSIRTAMMSIQALLSTPNSDSGLNGTVTYLMNkdreAYQKTATFWTYH 156 snowberry fruit fly
GAV01272      87 SsVTGAICLDILRTnWAAAMTLRTVMISIQALLGSPVADDPQDAVVASQFKtnrsLFDSTAKYWATT 153 Ramazzottius varieornatus
KNE56815      83 SsQTGAICLDILRNeWTPVLGIAKALLSVQQLLESPEPDDPQDAVVAAHYKrdrrDFERTAAAWTQF 149 Allomyces macrogynus ATCC 38327
XP_012896965  80 SsKTGAICLDILKDrWTAAMNLDTCLRSIQSLLTDAVPEDPQDYEVAVVYCndneKYLKTAREWTEK 146 Blastocystis hominis

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