2FWR,5OF4,5SVA,5TNU


Conserved Protein Domain Family
SF2_C_XPB

?
cd18789: SF2_C_XPB 
Click on image for an interactive view with Cn3D
C-terminal helicase domain of XPB-like helicases
TFIIH basal transcription factor complex helicase XPB (xeroderma pigmentosum type B) subunit (also known as DNA excision repair protein ERCC-3 or TFIIH 89 kDa subunit) is the ATP-dependent 3'-5' DNA helicase component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. XPB is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Statistics
?
PSSM-Id: 350176
Aligned: 28 rows
Threshold Bit Score: 167.426
Created: 31-Jan-2018
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative ATP
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ATP binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of the superfamily

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
2FWR_A    264 IKRIFVPlaederveyekrekvykqflrargitlrraed-fnkivmasgyderayealraweearriafnskNKIRKLRE 342 Archaeoglobus fulg...
5TNU_A    259 IKKLYVSltneekkrydglrkklkdflssrglklqnldd-fhrlvklaakdkeareallawheslniavnsqSKIEKLRE 337 Sulfolobus tokodai...
BAB74650  251 IVQIKVKlsqqererynnliqirndflrqskvslgsiqg-wqmfvqmsarsqsgrramlahreakeialgtdSKLRILAN 329 Nostoc sp. PCC 7120
BAB76402  377 CTEIRVSqdaerqmtyalap----------------------------------------rrnqfrvaaenpHKVQVVKE 416 Nostoc sp. PCC 7120
ABC20218  377 CYEVRLNlppemrldyasag----------------------------------------erdkyriaatnpVKEAVVEN 416 Moorella thermoace...
ABG04941  264 LVRIPIEltarerleyaqadavyrdflrkhrlqirspedwqrfilvastshsggreallaarkrreiqnsavRKVATLEN 343 Rubrobacter xylano...
ACL11555  360 DELRRKYyslvngkefkqvleeartne-------------------------karealrvhsqmrsilararAKIEKAVE 414 Desulfurococcus ka...
ACM57143  291 FVEYVRDagitftsgsdyqelvkrsgnd-----------------------paareallakqdareimmnarRKIDRLES 347 Halorubrum lacuspr...
ADI13529  251 VVQIRVKlsaaerarydaligtrnaflaqqgislgtlsg-wgrfvrasarskagraamlahrearaiafgteGKLRVLAD 329 Truepera radiovict...
EGC77766  409 CTEIRVNiapskeieyavgt----------------------------------------trekhriasenpAKLEIVKK 448 Treponema denticol...
Feature 1                                                                                     
2FWR_A    343 ILERHrk--dKIIIFTRhneLVYRISKVFLIPAITHrtsreEREEILEGFRtgrfrAIVSSQVLDEGIDVpdANVGVIMS 420 Archaeoglobus fulg...
5TNU_A    338 ILQEYkn--eKIIVFTRdtqMAYRISKTFLIPVVTYktdkdEREEILQKFRdgeyrVIVASTVFDEGVDVpdATLAIVMG 415 Sulfolobus tokodai...
BAB74650  330 LLAKHyp--eRVLIFTAdnaTVYKISQDLLIPAITHqtpvkERHEILTKFRegeynTLVASHVLNEGVDVpaAAIAIILS 407 Nostoc sp. PCC 7120
BAB76402  417 LLEKEsg--hRILIIGEflaQLETLAKVTGLPLITGktpekEREQLYQAFRegklgGLVLSRVGNFAIDLpdADILIQVS 494 Nostoc sp. PCC 7120
ABC20218  417 IIKRHeg--eQVLVIGQyleQLERLARRLGVPMITGqtsnrERERLYQAFRegtlkCLVVSKVANFAIDLpeASVAVQVS 494 Moorella thermoace...
ABG04941  344 LLKKHwn--dRCIVFTKsveEVYALSRRFLLPGITYetparERKEILDRFRegryrAIIASDVLNEGVDVpeAGVGIILA 421 Rubrobacter xylano...
ACL11555  415 IARRElengsKVIIFTQyvdQAREISERLNAYLLTGevptsERKHILEEFKgsekgILVVTTVGDEGLDIpdANVGIIVS 494 Desulfurococcus ka...
ACM57143  348 ILDRHrd--dRVIVFTAhtdLVYRLSERFLLPAITAetgakERREILERFRegtygRVVAANVLDEGVDVpdANVAVVLS 425 Halorubrum lacuspr...
ADI13529  330 LLRRHfp--eRTLVFTDdnaTVYRVSQDFLIPAITHqtkvkERHEILARFRsgaypVLVTSRVLNEGVDVpaAKVAVVLS 407 Truepera radiovict...
EGC77766  449 LLTKHke--nQILIIGQylsQLETIAKEINAPLITGkntnaERELLYDSFRkgeinVLVVSKVANFAIDLpdASVAIQVS 526 Treponema denticol...
Feature 1                   #  #                 
2FWR_A    421 gs-gsAREYIQRLGRILRpskg---kkeaVLYELI 451 Archaeoglobus fulgidus
5TNU_A    416 gy-gtKRQFLQRLGRILRkkd-----keaLLIEIV 444 Sulfolobus tokodaii str. 7
BAB74650  408 gt-gsTREYIQRLGRILRkgniq--nkqaILYEVI 439 Nostoc sp. PCC 7120
BAB76402  495 gkygsRQEEAQRLGRVLRpksdgrpaqfyTLVSLR 529 Nostoc sp. PCC 7120
ABC20218  495 gafgsRQEEAQRLGRILRpkkg---glpaSFYTLV 526 Moorella thermoacetica ATCC 39073
ABG04941  422 gs-asRREYVQRLGRLLRpreg----kraVLYELV 451 Rubrobacter xylanophilus DSM 9941
ACL11555  495 gt-gsRRQFIQRLGRLLRpkpg---gkeaILYEIV 525 Desulfurococcus kamchatkensis 1221n
ACM57143  426 gs-gsEREFTQRLGRVLRpkdd---ggraILYEVV 456 Halorubrum lacusprofundi ATCC 49239
ADI13529  408 gt-gsTREYVQRLGRILRrgeg----klaVLYEVV 437 Truepera radiovictrix DSM 17093
EGC77766  527 gvfgsRQEEAQRLGRILRpke-----cdsHFYSIV 556 Treponema denticola F0402

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap