2EW3,2DBM,3C0C,3IQL


Conserved Protein Domain Family
SH3_Endophilin_A

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cd11803: SH3_Endophilin_A 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Endophilin-A
Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212737
Aligned: 29 rows
Threshold Bit Score: 105.034
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##             # ##    
2EW3_A         4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHG-ESGFFPINYVEVI 58  human
AAW25789     306 PSCRALFDFEAENDSELPFSEGDIISLILRVDENWYEGELNG-RKGYFPVNYVEVI 360 Schistosoma japonicum
XP_002406889 292 PCCRALYDFDPENEGELGFREGDLVTLVRRVDDNWFEGSHDG-RTGLFPVNYVEVV 346 black-legged tick
XP_001623261 294 EKVKALYDFEPENDGELGFSEGDIITIESTVDENWLEGSVHG-RTGLFPRNYVESM 348 starlet sea anemone
XP_002110909 306 PCAKALYDFSPENEGELGFHEGDLIYLINRIDENWMEGTCNG-QTGYFPTTYVEVV 360 Trichoplax adhaerens
NP_001122513 323 PQCRALFDFDAQSEGELDFKEGTLIELVSQIDENWYEGRVNG-KTGLFPVTYVQVL 377 nematode
EFX67003     334 PSATAVYDFDPENPGELGFKEGDCITLTSRIDENWFEGSVNG-KTGFFPVNYVQVT 388 common water flea
EGD72286     283 PSAVALFDFEAENEGELTFKEGDTIRLLSRLDENWLEGEVDG-QQGMFPVNYVEII 337 Salpingoeca sp. ATCC50818
EFW39801     286 KAYRALFDFEAENPGELTFREGDTIYVSGRLDENWLEGSCNG-QSGIFPVQYIEYN 340 Capsaspora owczarzaki ATCC 30864
XP_002120114 291 PSCKAIFDFEPENEGELAFKEGEILTLVAEIDDNWFEGMSQNgDTGYFPKTYVEVV 346 Ciona intestinalis

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