Conserved Protein Domain Family
PRK05658

?
PRK05658: PRK05658 
RNA polymerase sigma factor RpoD; Validated
Statistics
?
PSSM-Id: 235549
Aligned: 361 rows
Threshold Bit Score: 640.689
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
114570679  14 SDGPLLDLTDQSVKNMVKTAKKRGY-VTHDELNAVLP-SEEFSSEQIEDVLA------QLSEMGINVVDNDSDv------ 79 
154148465   1 --MATSKDIFSQIEKFFSE-NQKNY-VTFERLIKFF--DKAPTSTQVKKIED------LAKNFKIKLISSAEIaki---- 64 
15611152   29 KESNKENKNNKAKEGKIKEAKTKES-KVKETAKEPIPvKKLSFNEALEELFAnslsdcVSYESIIQISAKVPTlaqikki 107
108562514  39 RQENKAKESNKAKESKIKENKAKENkIKEAKAKELVPvKKLSFNEALEELFAnslsdcVSYESIIQISAKVPTlaqvkki 118
188526895   8 EKAPKKTKTEATQENKIKESKIKEAkTKETKAKELVPvKKLSFNEALEELFAnslsdcVSYESIIQISAKVPTlaqvkki 87 
208434051  29 KENNKENKNNKAKESKIKENKTKESkIKEAKAKEPIPvKKLSFNEELEELFAnslsdcVSYESIIQISAKVPTlaqikki 108
210134292  27 KQENKAKENNKTKESKIKENKTKESkIKEAKAKEPVPvKKLSFNEALEELFAnslsdcVSYESIIQISAKVPTlaqvkki 106
254778811  27 KQENKAKESNKAKESKIKENKTKES-KVKETAKEPVPvKKLSFNEALEELFAnslsncVSYESIIQISAKVPTlaqikki 105
298736968  27 KQENKAKESNKAKEGKIKENKTKES-KVKETAKELVPvKKLSFNEALEELFAnslsdcVSYESIIQISAKVPTlaqvkki 105
109948008   6 KKKANEEKAPKRAKTEAKESKIKESkPKETKIKETKPtKKPSFNEELEELFAnslsdcVSYESIIQISAKVPTlaqikki 85 
114570679  80 ------DDDSAETPKPakGAAsaAttssDD-----DEedsddeeesdsravAGASKTAVTGLNTPSSadRTDDPVRMYLR 148
154148465  65 ----knIEDLKRIKER--EKKakSe--lEK---------------------NDDFDIASDNELLEWS--RSDSPVRMYLR 113
15611152  108 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIknteekqkvldeelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 175
108562514 119 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIkkteekqkvldeelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 186
188526895  88 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIkkteekkkvldeelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 155
208434051 109 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIkkteekqkvldeelEDGYDFLKEKDFLEWS--RSDNPVRMYLR 176
210134292 107 kelcqkYQKKLVSSSEy----------aKKlnaidKIkkteekqkvldeelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 174
254778811 106 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIknteekqkvldeelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 173
298736968 106 kelcqkYQKKLVSSSEy-AKKlnA----ID-----KIkkteekqkvlneelEDGYDFLKEKDFLEWS--RSDSPVRMYLR 173
109948008  86 kelcqkYQKKLVSSSEy-AKKlnA----ID-----RIknteekqkvldgelEDGYDFLKEKEFLEWS--RSDSPVRVYLR 153
114570679 149 EMGSVELLSREGEIAIAKRIEAGRNAMIRGLCESPLTFEAIMVWRDELQEGQVLLRDIIDLDAtyggqqaeaaeddDENA 228
154148465 114 EMGAVDLLKKEEEIEISKKIELGEDIIIDAFCSVPFLIDFILAYEEPLINRERRVKELFKNFD-------------ENEE 180
15611152  176 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 241
108562514 187 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 252
188526895 156 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 221
208434051 177 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 242
210134292 175 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 240
254778811 174 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 239
298736968 174 EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 239
109948008 154 EMGNIDLLKKEEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSF--------------DDDD 219
114570679 229 DGTGEgetptpaggttpkpesddeddgedgekkseksgdddeedgETSSSDDddDD-DEdg--vSLSLSAMEAELRDGVM 305
154148465 181 EENEE-------------------------------------------EIEEdeENeEEnvankKAKISRRNDKRAEKVM 217
15611152  242 ENSVS----------------------------------------DPKKDDDseED-EEne-erKKVVSEKDKKRVEKVQ 279
108562514 253 ENSVS----------------------------------------DSKKDDDseED-EEnk-erKKVVSEKDKKRVEKVQ 290
188526895 222 ENSVS----------------------------------------DSKKDDDseED-EEne-erKKVVSEKDRKRVEKVQ 259
208434051 243 ENSVS----------------------------------------DPKKDDDseED-EEne-erKKVVSEKDKKRVEKVQ 280
210134292 241 ENSVS----------------------------------------DSKKDEEneEDeENee--rKKVVSEKDKKRVEKVQ 278
254778811 240 ENSVS----------------------------------------DSKKDDDseED-EEne-erKKVVSEKDKKRVEKVQ 277
298736968 240 ENSVS----------------------------------------DSKKDDDseED-EEne-erKKVVSEKDKKRVEKVQ 277
109948008 220 ENSVS----------------------------------------DSKKDDDneED-EEne-erKKVVSERNKKRVEKVQ 257
114570679 306 ETLDSIATDFAAFRKLQDKLVAARIegkdltkQSREKYEGFQNAIVTNLNTMHLNNARIEALVEQLYAINKERMALEGKL 385
154148465 218 KSFKALEKAKKDWVKYADKNKSDIFdmnkktlLQKLNLTFKKKILKEKLMDLGPTSKLITEIVKSIEKALKSDTEFAREL 297
15611152  280 ESFKALDKAKKEWLKALEAPIDEKEde----lVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 355
108562514 291 ESFKALDKAKKEWLKALEAPVDEKEde----lVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 366
188526895 260 ESFKALDKAKKEWLKALEAPVDEKEde----lVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 335
208434051 281 ESFKALDKAKKEWLKALEAPVDEKEde----lVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 356
210134292 279 ESFKALDKAKKEWLKALEAPIDEKEde----lVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 354
254778811 278 ESFKALDKAKKEWLKALEAPIDEKEde----lVRLLTLAYKRQTLKDRLYDLKPTSKLINELVKTMETTLKSGDGFEKEL 353
298736968 278 ESFKALDKAKKEWLKALEAPIDEKEde----lVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 353
109948008 258 ESFKALDKAKKEWLKALEAPIDEKEde----lVRLLTLAHKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKEL 333
114570679 386 LR-MADAHGVPRAQFMDSYFGNELNPEWPTSMASTSKAWARFIDREGVDAGKIRDDLADLTQRAGVPIEDLRRIVRTVQK 464
154148465 298 KRlEYKIPLINLPDHRKRHEEILKDIISLSKDEISQMVFENTTVSTYMDIKRLFQTREASKQGFNIDPDRLKQILEQIKR 377
15611152  356 KR-LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKR 434
108562514 367 KR-LEYKLPLFNDTLIANHKKILANITHMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKR 445
188526895 336 KR-LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKR 414
208434051 357 KR-LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKR 435
210134292 355 KR-LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKR 433
254778811 354 KRlE-YKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKR 432
298736968 354 KR-LEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKR 432
109948008 334 KR-LEYKLPLFNDTLIANHQKILSNITNMTKEDIIAQVPETTMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKR 412
114570679 465 GEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 544
154148465 378 GKKISDEAKSLMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQAISRAIADQA 457
15611152  435 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 514
108562514 446 GKLISDRAKNKMAQSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 525
188526895 415 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 494
208434051 436 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 515
210134292 434 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 513
254778811 433 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 512
298736968 433 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA 512
109948008 413 GKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYATWWIKQAISRAIADQA 492
114570679 545 RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKN 624
154148465 458 RTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVIKITKEPISLEAPVGNEDDGKFGDFVEDKG 537
15611152  515 RTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 594
108562514 526 RTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 605
188526895 495 RTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 574
208434051 516 RTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 595
210134292 514 RTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 593
254778811 513 RTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 592
298736968 513 RTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 592
109948008 493 RTIRIPIHMIDTINRINKVMRKHMQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 572
114570679 625 AVLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGI-GMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRK 703
154148465 538 TISPIDQILKNDLKEQIDKVLDQLNERERAVIRMRFGLlDDESDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRD 617
15611152  595 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 674
108562514 606 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 685
188526895 575 IVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 654
208434051 596 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 675
210134292 594 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 673
254778811 593 IVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 672
298736968 593 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 672
109948008 573 IVSSIDHIMREDLKVQIEGVLDQLNEREKAVIRMRFGLlDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRI 652
114570679 704 LRSFLDN 710
154148465 618 LKKYIES 624
15611152  675 LRNYLRI 681
108562514 686 LRNYLRI 692
188526895 655 LRNYLRI 661
208434051 676 LRNYLRI 682
210134292 674 LRNYLRI 680
254778811 673 LRNYLRI 679
298736968 673 LRNYLRI 679
109948008 653 LRNYLRI 659
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap