1EKZ,1STU


Conserved Protein Domain Family
DSRM_STAU_rpt3

?
cd19859: DSRM_STAU_rpt3 
third double-stranded RNA binding motif of Drosophila melanogaster maternal effect protein Staufen and similar proteins
Staufen is a double-stranded RNA binding protein required both for the localization of maternal determinants to the posterior pole of the egg, oskar (osk) RNA, and for correct localization to the anterior pole, anchoring bicoid (bcd) RNA. The family also includes two Staufen homologs from vertebrates, Staufen 1 and Staufen 2. They are present in distinct ribonucleoprotein complexes and associate with different mRNAs. Staufen 1 may play a role in specific positioning of mRNAs at given sites in the cell by cross-linking cytoskeletal and RNA components, and in stimulating their translation at the site. It binds double-stranded RNA (regardless of the sequence) and tubulin. Staufen 2 is an RNA-binding protein required for the microtubule-dependent transport of neuronal RNA from the cell body to the dendrite. Staufen proteins contain five double-stranded RNA binding motifs (DSRMs). This model describes the third motif. DSRM is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
?
PSSM-Id: 380688
Aligned: 15 rows
Threshold Bit Score: 101.706
Created: 23-Oct-2018
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1EKZ; Drosophila melanogaster Staufen binds a RNA hairpin, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1            #  ## ##             ######                               #   #           
1EKZ_A          9 PISQVHEIGIKRnMTVHFKVLREeGPAHMKNFITACIVGs------------iVTEGEGNGKKVSKKRAAEKMLVEL 73   fruit fly
1STU_A          1 PISQVHEIGIKRnMTVHFKVLREeGPAHMKNFITACIVGs------------iVTEGEGNGKKVSKKRAAEKMLVEL 65   fruit fly
Q9NUL3        208 EISLVFEIALKRnMPVSFEVIKEsGPPHMKSFVTRVSVGe------------fSAEGEGNSKKLSKKRAATTVLQEL 272  human
O95793        185 EISQVFEIALKRnLPVNFEVAREsGPPHMKNFVTKVSVGe------------fVGEGEGKSKKISKKNAAIAVLEEL 249  human
Q3L1C9        579 EISLVHEIALRRnMVVQFEVIREtGPPHMKNFLTRCTVAd------------mVTEGEGNSKKTSKKKAAELMLEEL 643  California sea hare
XP_006811959  305 EISQCYESAHRRnLPISFEVINEsGPPHMKTFITRCTIGe------------ySAEAEGNGKKVSKKRAAAKVLEQL 369  Saccoglossus kow...
CBY25144      999 EVSLVYELALKRnLTVQFEKISEeGPPHLKHYSIRLHVGnpeeqedneqityfTAEGQAQSKKLARRKAAITVLDEM 1075 Oikopleura dioica
EEN44004      283 EITLVYEIARKRnMSVSFEVVKEsGPPHMKTFVTSCKVGd------------fVAEGEGNGKKVSKKRAAQKVLEQL 347  Florida lancelet
EFX74549      337 PVSLVHELALKLnLTVEFTVLNEsGPPHMRNFIVQCKLGe------------vTTQGEGNCKKVAKRKAAEIMIDEL 401  common water flea
P25159        579 PISQVHEIGIKRnMTVHFKVLREeGPAHMKNFITACIVGs------------iVTEGEGNGKKVSKKRAAEKMLVEL 643  fruit fly

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap