2ELI,3PFQ,1TBN


Conserved Protein Domain Family
C1_cPKC_rpt2

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cd20836: C1_cPKC_rpt2 
second protein kinase C conserved region 1 (C1 domain) found in the classical (or conventional) protein kinase C (cPKC) family
PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. cPKCs are potent kinases for histones, myelin basic protein, and protamine. They depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG (1,2-diacylglycerol) in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Members of this family contain two copies of C1 domain. This model corresponds to the second one. The C1 domain is a cysteine-rich zinc binding domain that does not bind DNA nor possess structural similarity to conventional zinc finger domains; it contains two separate Zn(2+)-binding sites.
Statistics
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PSSM-Id: 410386
Aligned: 34 rows
Threshold Bit Score: 111.276
Created: 4-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative DAG/PE
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:H C C C C H C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:Two non-consecutive sets of zinc-binding residues form two separate metal-binding sites.
  • Structure:2ELI; Homo sapiens PKC-alpha binds two Zn2+ ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #            #  #             #  #    #  #         #    
2ELI_A         18 HKFKIHTYGSPTFCDHCGSLLYGLiHQGMKCDTCDMNVHKQCVINVPs--LCGMDH 71   human
P05130        120 HNFEPFTYAGPTFCDHCGSLLYGIyHQGLKCSACDMNVHARCKENVPs--LCGCDH 173  fruit fly
NP_001296610   97 HKFKVHTYSSPTFCDHCGTLLYGLfHQGLKCGACDMNVHKRCEKSGCipkLCGADH 152  Hydra vulgaris
XP_030526978  332 HQFQIHTYGSPTFCDHCGSLLYGIiHQGLKCKTCDMNVHKRCQAHVPp--LCGHDQ 385  Rhodamnia argentea
EFX72294      121 HKFKPYTYSSPTFCDHCGSLLYGViHQGMKCDACDMNVHKRCTESVPh--LCGCDH 174  common water flea
XP_002731384  104 HKWKIHSYSSPTFCDHCGSLLYGLyHQGNKCECCDMNVHKRCRKQTPn--MCGCDH 157  Saccoglossus kowalevskii
Q25378         93 HKFKVHSYNSPTFCDHCGSLLYGLyHQGMKCGACDMNVHKRCQKSVPn--LCGADH 146  painted urchin
XP_006009728  109 HKFKPHTYSSPTFCDHCGSLLYGLvHQGMKCSGCEMNVHKRCVMSVPs--LCGMDH 162  coelacanth
XP_008284058  125 HTFKVHTYSSPTFCDHCGSLLYGLiHQGMKCTCCDMNVHRRCETSVPs--LCGQDH 178  bicolor damselfish
EEC11048      101 HQFIIQTYTSPTFCDHCGSLLYGLiHQGFKCKACDMNVHKRCQESVPn--LCGCDH 154  black-legged tick

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