3GRN


Conserved Protein Domain Family
NUDIX_MutT_Nudt1

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cd04699: NUDIX_MutT_Nudt1 
MutT homolog-1 and similar proteins
MutT homolog-1 (MTH1), also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 1/Nudt1, is a member of the NUDIX hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the NUDIX family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the NUDIX motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved NUDIX motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.
Statistics
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PSSM-Id: 467579
Aligned: 30 rows
Threshold Bit Score: 114.257
Created: 14-Dec-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:NUDIX motif [structural motif]
Evidence:
  • Comment:G[X5]E[X7]REUXEEXGU, where U is a bulky aliphatic residue (usually Ile, Leu, or Val).
  • Comment:The NUDIX motif contains many of the active site residues of NUDIX hydrolases.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                ##        ############               
3GRN_A      7 YIISVYALIRNe--KGEFLLLRRSensr-----tnaGKWDLPGGKVNPDESLKEGVAREVWEETGItmv---pgDIAGQV 76  Methanosarcina mazei
ADC46003    7 WGLTVRGIVQQ---EDKILILRRHpksr-----nnpNKYELPGGKVDPGEFFDEALIREFKEETNLdvn---ivSLFETV 75  Methanobrevibacter...
AAB84628    8 YILAVRAFIEDd--DGRVLLIKRAsdsk-----tnaSRWELPGGKIGTGESLEEALKREVKEETNLeii---peEVMGVV 77  Methanothermobacte...
ADC46588    5 WGLTVRGICEY---NDKILLLKLRsisa-----hdpCKWEIPGGKVKKCEYFDSALKREYKEETGMdis---idSLYHVI 73  Methanobrevibacter...
ADZ10207    6 YGLAVRVLLVDe--NGKVLILKRStdsk-----tnpGKWELPGGKVNQDESFDHALLREVYEETGLkie---lgHVVGAS 75  Methanobacterium s...
EJN60847    8 ATVSQRAVLFGy--DDRILVVRRAs----------dGGWELPGGRLDADESTVEGLRREVREETGLdva---irRPIYTT 72  Halogranum salariu...
AEH38950    8 ATVSVRGVVFS---NDDVLILRRSt----------dREWELPGGRLGPDEPVVSGLQRELREETLLevd---vvDIVHAT 71  Halopiger xanaduen...
EJN60848    8 ATISQKAALFGp--DGDVLLLRRAs----------sGRWDVPGGHLRASEDVVTGLRREVREETGLdvd---veEPIYTD 72  Halogranum salariu...
CCB88653    7 FHLGVKALLFRe--KGEMLLLRLNpkkfdltadgdqVIWDLPGGRINRGETPLDALRREIFEETGIteiseispVTIDLT 84  Simkania negevensis Z
AEN04724   17 FAVTQKAVLVGpapEERILLLENQn-----------GVWELPGGQLVVGEQPDKGLKRAVSEVTGLdvk---vgDPVLTT 82  halophilic archaeo...
Feature 1                                                                        
3GRN_A     77 NFElt------ekKVIAIVFDGGYvv--aDVKLSYEHIEYSWVSLEKIlgme---tlpaYFRDFFER 132 Methanosarcina mazei
ADC46003   76 QDEfisrrtnqpiSTVQLMMNLEImg--gEVEISSEHDDFKWVSIEELkelykndmvtpTLRLTLEK 140 Methanobrevibacter ruminantium M1
AAB84628   78 EQKfp------viNAAHIIIRCRAe---gSVKLSHEHEGFAWVEPSDLrr--------yRLADWLSD 127 Methanothermobacter thermautotr...
ADC46588   74 QKNytac--ktgeKIKSIQLIMKVstnsdEVLISDEHDMYGWFTKEEIndmi----knnELTPPAKA 134 Methanobrevibacter ruminantium M1
ADZ10207   76 EQNlh------iiRAVHIIMSGKIve--gELTLSSEHEGYAWVLMETLgd--------yELADWLED 126 Methanobacterium sp. AL-21
EJN60847   73 SWRndr-----gnGRYGVYYYCLAeg--dGVTLSDEHTEYEWLTPSAAa---------eRLSETQGS 123 Halogranum salarium B-1
AEH38950   72 AWRndd-----dhGRFAVYYLCRTdh--rPVQLSEEHSDSKWVSFAEAt---------tTLTKSHAA 122 Halopiger xanaduensis SH-6
EJN60848   73 AWRtke-----gdGRYAVVFRCTTds--rAVELSDEHRDWQWTDPERAvddv---lspsELRKAIER 129 Halogranum salarium B-1
CCB88653   85 TIRvpte--ngdcGVIYATYSCRLaq-eeTLSLSFEHLGYTWVVPEIAasl-----lplDFPENLRA 143 Simkania negevensis Z
AEN04724   83 AWTldn-----ddGAFAAIYAARSvt--eQASLLGGHARAVWMDPEQAie--------rELNETQRR 134 halophilic archaeon DL31

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