3L1Z,2KR4,2KRE,5O75


Conserved Protein Domain Family
RING-Ubox_UBE4B

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cd16658: RING-Ubox_UBE4B 
Click on image for an interactive view with Cn3D
U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
UBE4B, also known as UFD2a, is a U-box-type ubiquitin-protein ligase that functions as an E3 ubiquitin ligase and an E4 polyubiquitin chain elongation factor, which catalyzes formation of Lys27- and Lys33-linked polyubiquitin chains rather than the Lys48-linked chain. It is a mammalian homolog of yeast UFD2 ubiquitination factor and it participates in the proteasomal degradation of misfolded or damaged proteins through association with chaperones. It is located in common neuroblastoma deletion regions and may be subject to mutations in tumors. UBE4B has contradictory functions upon tumorigenesis as an oncogene or tumor suppressor in different types of cancers. It is essential for Hdm2 (also known as Mdm2)-mediated p53 degradation. It mediates p53 polyubiquitination and degradation, as well as inhibits p53-dependent transactivation and apoptosis, and thus plays an important role in regulating phosphorylated p53 following DNA damage. UBE4B is also associated with other pathways independent of the p53 family, such as polyglutamine aggregation and Wallerian degeneration, both of which are critical in neurodegenerative diseases. Moreover, UBE4B acts as a regulator of epidermal growth factor receptor (EGFR) degradation. It is recruited to endosomes in response to EGFR activation by binding to Hrs, a key component of endosomal sorting complex required for transport (ESCRT) 0, and then regulates endosomal sorting, affecting cellular levels of the EGFR and its downstream signaling. UBE4B contains a ubiquitin elongating factor core and a RING-like U-box domain at the C-terminus.
Statistics
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PSSM-Id: 438320
Aligned: 28 rows
Threshold Bit Score: 127.778
Created: 13-Apr-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
E2 binding site
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:E2 binding site [polypeptide binding site]
Evidence:
  • Structure:3L1Z; Homo sapiens E4b ubiquitin ligase in complex with Ubch5c E2 ubiquitin conjugating enzyme, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          #                                             ##  #  ##  #
3L1Z_B         23 YSDAPDEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSpTDPFNRQTLtESMLEPVPELKEQIQAWMREKQ 96   human
EJW85280      166 GDDVPDDFRDPVMNTLMTDPVILP-SGHKMDRKHIMRHLLSSqTDPFTRQPLsETQLVSDDALKTKIRAWIKEKL 239  Wuchereria bancrofti
XP_013398421  960 LGDVPEEFQDAIMGTVMKDPVILP-SGQVVDRSTIARHLLSDqTDPFNRSPLtMEMLKPHDELREKIKLWIQDNK 1033 Lingula anatina
XP_022840474  907 LGEIPDDFLDPILSTLMRDPVKLP-SGHSCDRSIITRHLLSDeTDPFSRQPLtADQLVPDDELRERISAWITERK 980  Ostreococcus tauri
ELU16797      920 LADAPEEFLDPIMGSLMSDPVLLPsSGQIVDRATIARHILSDqSDPFNRKPLtMEMVLPAVELKAKIDAWIAQIK 994  Capitella teleta
BAM82688     1077 LSEAPDEFLDPILATLMQDPVMLPsSRKIVDRSTIVRHLLSDpHDPFNRQPLrIEDVIPQPALKEQITSWLQERQ 1151 Cyanidioschyzon me...
EDO44825      988 LPEPPEDYQDPIMNTLMRCPVRLPtSGKIMDKEIISRHLLSDqSDPFNRKHLtVSMLEPEEDLKAEIEEWIARNS 1062 starlet sea anemone
XP_006814992  836 FGEIPEEFLDPIMDTLMIDPVLLPtSGHIVDRTTIARHLLSDmTDPFNRSPLtMDQVKPDTELKARIFEWRQAQQ 910  Saccoglossus kowal...
XP_013088131  976 LADAPEEFLDPIMGTLMSDPVMLPsSRNIVDRNVIARHILSDqTDPFNRQPLsLDMVIPQPDLKNRIQAWKRDRL 1050 Biomphalaria glabrata
XP_014158767 1000 LGEIPDEYLDPIMCTLMKDPVILPtSKNVCDRSIITTHLLTEqKDPFNRMPLtEDMLQPDDSLREQIQAWIKTRK 1074 Sphaeroforma arcti...

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