3K51,3MHD,3MI8


Conserved Protein Domain Family
TNFRSF6B

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cd10575: TNFRSF6B 
Click on image for an interactive view with Cn3D
Tumor necrosis factor receptor superfamily member 6B (TNFRSF6B), also known as decoy receptor 3 (DcR3)
The subfamily TNFRSF6B is also known as decoy receptor 3 (DcR3), M68, or TR6. This protein is a soluble receptor without death domain and cytoplasmic domain, and secreted by cells. It acts as a decoy receptor that competes with death receptors for ligand binding. It is a pleiotropic immunomodulator and biomarker for inflammatory diseases, autoimmune diseases, and cancer. Over-expression of this gene has been noted in several cancers, including pancreatic carcinoma, and gastrointestinal tract tumors. It can neutralize the biological effects of three tumor necrosis factor superfamily (TNFSF) members: TNFSF6 (Fas ligand/FasL/CD95L) and TNFSF14 (LIGHT) which are both involved in apoptosis and inflammation, and TNFSF15 (TNF-like molecule 1A/TL1A), which is a T cell co-stimulator and involved in gut inflammation. DcR3 is a novel inflammatory marker; higher DcR3 levels strongly correlate with inflammation and independently predict cardiovascular and all-cause mortality in chronic kidney disease (CKD) patients on hemodialysis. Increased synovial inflammatory cells infiltration in rheumatoid arthritis and ankylosing spondylitis is also associated with the elevated DcR3 expression. In cartilaginous fish, mRNA expression of DcR3 in the thymus and leydig, which are the representative lymphoid tissues of elasmobranchs, suggests that DcR3 may act as a modulator in the immune system. Interestingly, in banded dogfish (Triakis scyllia), DcR3 mRNA is strongly expressed in the gill, compared with human expression in the normal lung; both are respiratory organs, suggesting potential relevance of DcR3 to respiratory function.
Statistics
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PSSM-Id: 276901
Aligned: 17 rows
Threshold Bit Score: 249.631
Created: 13-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptideCRD1CRD2CRD3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide ligand binding site [polypeptide binding site]
Evidence:
  • Structure:3K51: Human tumor necrosis factor receptor TNFRSF6B (also known as DcR3) binds TNFSF15 ligand (TL1A); contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    #### ###   #                        
3K51_B         7 PTYPWRDaeTGERLVCAQCPPGTFVQRPCRrDSPTTCGPCPPrHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRAC 86  human
XP_006008800  38 PTYQQKDrrSGETLTCNQCPKGTYVVKHCTrDQQTVCGPCPSlHYTAFWNYLDKCRYCNVFCGENQVETRQCSATHNRVC 117 coelacanth
BAF62126      25 PTYKRRDaiTGQMVTCEQCPPGTFVKEHCTsIQPTMCERCPDlHYTQYWNYLQKCRYCNVFCVDYQYEKHQCNSTHNRVC 104 banded houndshark
AAI59341      38 LTYQWKDsvTGELLICNKCQPGTSVAKHCTsTSPTQCQPCPDnHYTQYWNYLDKCRYCNVFCEDRERVKHECNATHNRVC 117 African clawed ...
XP_006639513  24 PTYQWKDdkTGEAVTCEKCPPGTHMKRHCGrDRRTECAPCPGlHYTEFWNYIDECRYCNVFCTENEFEKRKCSPTHNRLC 103 spotted gar
BAG12082      25 STYQWTDdvTGFPVTCDKCPPGTHVVKHCTkDRKTVCGLCPErHYTAFWNYVERCLYCNVFCMEDQFEKLPCNTTHNRVC 104 whitespotted co...
YP_003358263  19 KVPTWTD--PVTGLTCDRCPAGTHVVKQCTaTTPTECGACPAnHYTEFWNYLNRCLYCGVRCTEQQVEKSTCSATHNRVC 96  Anguillid herpe...
KFO85438      17 PTYQWKDvvTREKLTCQQCPPGTFVAQHCTrDRQTVCAPCPDlHYTQYWNYLEKCRYCNVICGEKQVEVQQCNSTHNRVC 96  Buceros rhinoce...
XP_008496003  21 PTYQWKDavTREKLTCLQCPPGTFVAQHCSkERQTVCQPCPDlHYTQYWNYLEKCRYCNVICEEQQVEVQRCNSTHNRVC 100 Anna's hummingbird
CDQ96070      29 PTYIWRDdvTGVSFTCDKCPPGTHLRMRCTkDSKTECEPCPKsHYTEIWNYIERCQYCNIFCTDDQFVSVQCTQFHNRKC 108 rainbow trout
Feature 1                                                                                        
3K51_B        87 RCRTGFFAha-gFCLEHASCPPGaGVIAPGTpsqNTQCQPCPPGTFSassssseqCQPHRNCTALGlaLNVPGsssHDTL 165 human
XP_006008800 118 ECQPGYYLnf-eFCMKHSTCPPGyGVSKPGDanaDTKCDPCLPGHFAass--skpCRRHTDCASSGleVNVPGtrsHDTL 194 coelacanth
BAF62126     105 ECQPGYYLef-eFCLKQSSCPYGaGVIKMGTpysDTNCEPCSHGYFSpsvsssepCFIHTNCTKEGleVNVPGnqyHDTL 183 banded houndshark
AAI59341     118 ECQPGYHRgi-hFCVQHKACDPGyRVSQEGTaesNTECAPCPAGTFAvhpsmeknCRPHTNCSSLGleVNVPGtthHDTL 196 African clawed ...
XP_006639513 104 ECRAGFYRry-eFCIRHSVCPAGeGVVANGTaheDVQCQTCPIGSYSstpsgtepCRPHRWCPPGQ--IAIPGddkHDTF 180 spotted gar
BAG12082     105 ECKSGHYFnh-gFCTKHSACPPGqGASMTGTaytDVKCVKCEEGYFSseystmnqCQKQHQCKDGE--RTIPSnekRDTF 181 whitespotted co...
YP_003358263  97 ECKPGYHIyaddFCLRHSTCPPGqGLLVAGTptsNTRCGPCQAGYFSaeds-teaCKPHTPCKDTE--RSVPGtatQDTF 173 Anguillid herpe...
KFO85438      97 QCQEGYYSem-eFCIKHSECPPGsGVKELGTpfkNTQCHPCPPGFFSstasstrpCQSHQDCKQQGktTNVPGnryHDTL 175 Buceros rhinoce...
XP_008496003 101 QCREGYYSem-eFCIRHSECPPGfGVEKLGSpfeDTQCQPCPHGFFSsatsstkpCQPHQDCQQQGkvTNVPGnqyHDTL 179 Anna's hummingbird
CDQ96070     109 ECKDGFYMrh-gSCSRHSRCLPGeGVLSNGTaysDVTCEPCRGGFFSadsssrksCQKFTVCTPDR--TTIPGddrHDVY 185 rainbow trout
Feature 1            
3K51_B       166 CTST 169 human
XP_006008800 195 CTTC 198 coelacanth
BAF62126     184 CTSC 187 banded houndshark
AAI59341     197 CTSC 200 African clawed frog
XP_006639513 181 CSSC 184 spotted gar
BAG12082     182 CTLC 185 whitespotted conger
YP_003358263 174 CTSC 177 Anguillid herpesvirus 1
KFO85438     176 CTSC 179 Buceros rhinoceros silvestris
XP_008496003 180 CTSC 183 Anna's hummingbird
CDQ96070     186 CSAC 189 rainbow trout

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