U.S. flag

An official website of the United States government

NM_001931.5(DLAT):c.436G>A (p.Ala146Thr) AND Pyruvate dehydrogenase E2 deficiency

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 8, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001931286.3

Allele description [Variation Report for NM_001931.5(DLAT):c.436G>A (p.Ala146Thr)]

NM_001931.5(DLAT):c.436G>A (p.Ala146Thr)

Gene:
DLAT:dihydrolipoamide S-acetyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q23.1
Genomic location:
Preferred name:
NM_001931.5(DLAT):c.436G>A (p.Ala146Thr)
HGVS:
  • NC_000011.10:g.112028569G>A
  • NG_013342.1:g.8756G>A
  • NM_001372031.1:c.436G>A
  • NM_001372032.1:c.436G>A
  • NM_001372033.1:c.436G>A
  • NM_001372034.1:c.403G>A
  • NM_001372035.1:c.436G>A
  • NM_001372036.1:c.310G>A
  • NM_001372037.1:c.268G>A
  • NM_001372038.1:c.381+2270G>A
  • NM_001372039.1:c.436G>A
  • NM_001372040.1:c.364+2287G>A
  • NM_001372041.1:c.436G>A
  • NM_001372042.1:c.-31G>A
  • NM_001931.5:c.436G>AMANE SELECT
  • NP_001358960.1:p.Ala146Thr
  • NP_001358961.1:p.Ala146Thr
  • NP_001358962.1:p.Ala146Thr
  • NP_001358963.1:p.Ala135Thr
  • NP_001358964.1:p.Ala146Thr
  • NP_001358965.1:p.Ala104Thr
  • NP_001358966.1:p.Ala90Thr
  • NP_001358968.1:p.Ala146Thr
  • NP_001358970.1:p.Ala146Thr
  • NP_001922.2:p.Ala146Thr
  • NC_000011.9:g.111899293G>A
  • NR_164072.1:n.501G>A
Protein change:
A104T
Links:
dbSNP: rs1201600211
NCBI 1000 Genomes Browser:
rs1201600211
Molecular consequence:
  • NM_001372042.1:c.-31G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001372038.1:c.381+2270G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001372040.1:c.364+2287G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001372031.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372032.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372033.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372034.1:c.403G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372035.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372036.1:c.310G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372037.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372039.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001372041.1:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001931.5:c.436G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_164072.1:n.501G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Pyruvate dehydrogenase E2 deficiency (PDHDD)
Synonyms:
LACTIC ACIDEMIA DUE TO DEFECT OF E2 LIPOYL TRANSACETYLASE OF THE PYRUVATE DEHYDROGENASE COMPLEX; Dihydrolipoamide Acetyltransferase (E2) Deficiency
Identifiers:
MONDO: MONDO:0009502; MedGen: C1855565; Orphanet: 765; Orphanet: 79244; OMIM: 245348

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002197978Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Dec 8, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002197978.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 146 of the DLAT protein (p.Ala146Thr). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with DLAT-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024