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NM_144643.4(SCLT1):c.290+907del AND SCLT1-related disorder

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 31, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004540895.2

Allele description [Variation Report for NM_144643.4(SCLT1):c.290+907del]

NM_144643.4(SCLT1):c.290+907del

Gene:
SCLT1:sodium channel and clathrin linker 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
4q28.2
Genomic location:
Preferred name:
NM_144643.4(SCLT1):c.290+907del
HGVS:
  • NC_000004.12:g.129038143del
  • NG_034202.1:g.60474del
  • NG_034202.2:g.60405del
  • NM_001300898.2:c.291-8del
  • NM_001410807.1:c.290+907del
  • NM_144643.4:c.290+907delMANE SELECT
  • NC_000004.11:g.129959298del
  • NM_001300898.1:c.291-8delT
Molecular consequence:
  • NM_001300898.2:c.291-8del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001410807.1:c.290+907del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_144643.4:c.290+907del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
SCLT1-related disorder
Synonyms:
SCLT1-related condition
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004791627PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Likely benign
(Oct 31, 2019) 		germlineclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004791627.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024