| | NPHP3, NPHP3-ACAD11 +1 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | NPHP3, NPHP3-ACAD11 +1 more (K124E) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | NPHP3, NPHP3-ACAD11 +1 more (E108A) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (S104R) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | NPHP3, NPHP3-ACAD11 +1 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +2 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (R95K) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +1 more | |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more (E92D) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +2 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3-ACAD11 +2 more | Deletion (non-coding transcript variant +1 more) | not provided +1 more | GPathogenic/Likely pathogenic |
| | NPHP3-AS1, LOC129937586 +2 more (A88S) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +1 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not specified +2 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (P82Q) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | LOC129937586, NPHP3 +2 more (G78V) | Single nucleotide variant (non-coding transcript variant +1 more) | Meckel-Gruber syndrome +6 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +4 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not specified +5 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (A53del) | Microsatellite (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | LOC129937586, NPHP3 +2 more (A53G) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | LOC129937586, NPHP3 +2 more (A52T) | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +6 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (A51L) | Indel (non-coding transcript variant +1 more) | Nephronophthisis +1 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +1 more | GConflicting classifications of pathogenicity |
| | NPHP3-AS1, LOC129937586 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +6 more | GConflicting classifications of pathogenicity |
| | NPHP3, NPHP3-ACAD11 +2 more (E29D) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | NPHP3-AS1, LOC129937586 +2 more (A22V) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +5 more | |
| | NPHP3, NPHP3-ACAD11 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +6 more | |
| | NPHP3, NPHP3-ACAD11 +1 more | Single nucleotide variant (non-coding transcript variant +1 more) | not provided | |