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GRCh37/hg19 17p13.1(chr17:6934163-8217978)x1 AND Poly (ADP-Ribose) polymerase inhibitor response

Germline classification:
drug response (1 submission)
Last evaluated:
Nov 27, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000626431.1

Allele description [Variation Report for GRCh37/hg19 17p13.1(chr17:6934163-8217978)x1]

GRCh37/hg19 17p13.1(chr17:6934163-8217978)x1

Genes:
  • ATP1B2:ATPase Na+/K+ transporting subunit beta 2 [Gene - OMIM - HGNC]
  • ACAP1:ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 [Gene - OMIM - HGNC]
  • BORCS6:BLOC-1 related complex subunit 6 [Gene - OMIM - HGNC]
  • CLEC10A:C-type lectin domain containing 10A [Gene - OMIM - HGNC]
  • CD68:CD68 molecule [Gene - OMIM - HGNC]
  • CTC1:CST telomere replication complex component 1 [Gene - OMIM - HGNC]
  • CTDNEP1:CTD nuclear envelope phosphatase 1 [Gene - OMIM - HGNC]
  • FXR2:FMR1 autosomal homolog 2 [Gene - OMIM - HGNC]
  • GPS2:G protein pathway suppressor 2 [Gene - OMIM - HGNC]
  • GABARAP:GABA type A receptor-associated protein [Gene - OMIM - HGNC]
  • NAA38:N-alpha-acetyltransferase 38, NatC auxiliary subunit [Gene - OMIM - HGNC]
  • PHF23:PHD finger protein 23 [Gene - OMIM - HGNC]
  • RANGRF:RAN guanine nucleotide release factor [Gene - OMIM - HGNC]
  • POLR2A:RNA polymerase II subunit A [Gene - OMIM - HGNC]
  • ARHGEF15:Rho guanine nucleotide exchange factor 15 [Gene - OMIM - HGNC]
  • SPEM2:SPEM family member 2 [Gene - HGNC]
  • SOX15:SRY-box transcription factor 15 [Gene - OMIM - HGNC]
  • SENP3:SUMO specific peptidase 3 [Gene - OMIM - HGNC]
  • TNFSF12:TNF superfamily member 12 [Gene - OMIM - HGNC]
  • TNFSF13:TNF superfamily member 13 [Gene - OMIM - HGNC]
  • TNFSF12-TNFSF13:TNFSF12-TNFSF13 readthrough [Gene - HGNC]
  • WRAP53:WD repeat containing antisense to TP53 [Gene - OMIM - HGNC]
  • YBX2:Y-box binding protein 2 [Gene - OMIM - HGNC]
  • ACADVL:acyl-CoA dehydrogenase very long chain [Gene - OMIM - HGNC]
  • ALOX12B:arachidonate 12-lipoxygenase, 12R type [Gene - OMIM - HGNC]
  • ALOX15B:arachidonate 15-lipoxygenase type B [Gene - OMIM - HGNC]
  • ALOXE3:arachidonate lipoxygenase 3 [Gene - OMIM - HGNC]
  • ASGR1:asialoglycoprotein receptor 1 [Gene - OMIM - HGNC]
  • ASGR2:asialoglycoprotein receptor 2 [Gene - OMIM - HGNC]
  • AURKB:aurora kinase B [Gene - OMIM - HGNC]
  • CNTROB:centrobin, centriole duplication and spindle assembly protein [Gene - OMIM - HGNC]
  • CHRNB1:cholinergic receptor nicotinic beta 1 subunit [Gene - OMIM - HGNC]
  • CHD3:chromodomain helicase DNA binding protein 3 [Gene - OMIM - HGNC]
  • CLDN7:claudin 7 [Gene - OMIM - HGNC]
  • CYB5D1:cytochrome b5 domain containing 1 [Gene - HGNC]
  • DLG4:discs large MAGUK scaffold protein 4 [Gene - OMIM - HGNC]
  • DVL2:dishevelled segment polarity protein 2 [Gene - OMIM - HGNC]
  • DNAH2:dynein axonemal heavy chain 2 [Gene - OMIM - HGNC]
  • ELP5:elongator acetyltransferase complex subunit 5 [Gene - OMIM - HGNC]
  • EFNB3:ephrin B3 [Gene - OMIM - HGNC]
  • EIF4A1:eukaryotic translation initiation factor 4A1 [Gene - OMIM - HGNC]
  • EIF5A:eukaryotic translation initiation factor 5A [Gene - OMIM - HGNC]
  • FGF11:fibroblast growth factor 11 [Gene - OMIM - HGNC]
  • GUCY2D:guanylate cyclase 2D, retinal [Gene - OMIM - HGNC]
  • HES7:hes family bHLH transcription factor 7 [Gene - OMIM - HGNC]
  • KDM6B:lysine demethylase 6B [Gene - OMIM - HGNC]
  • MPDU1:mannose-P-dolichol utilization defect 1 [Gene - OMIM - HGNC]
  • NEURL4:neuralized E3 ubiquitin protein ligase 4 [Gene - OMIM - HGNC]
  • NLGN2:neuroligin 2 [Gene - OMIM - HGNC]
  • PER1:period circadian regulator 1 [Gene - OMIM - HGNC]
  • PLSCR3:phospholipid scramblase 3 [Gene - OMIM - HGNC]
  • PFAS:phosphoribosylformylglycinamidine synthase [Gene - OMIM - HGNC]
  • KCTD11:potassium channel tetramerization domain containing 11 [Gene - OMIM - HGNC]
  • KCNAB3:potassium voltage-gated channel subfamily A regulatory beta subunit 3 [Gene - OMIM - HGNC]
  • SHBG:sex hormone binding globulin [Gene - OMIM - HGNC]
  • SLC16A11:solute carrier family 16 member 11 [Gene - OMIM - HGNC]
  • SLC16A13:solute carrier family 16 member 13 [Gene - HGNC]
  • SLC2A4:solute carrier family 2 member 4 [Gene - OMIM - HGNC]
  • SLC25A35:solute carrier family 25 member 35 [Gene - OMIM - HGNC]
  • SLC35G6:solute carrier family 35 member G6 [Gene - HGNC]
  • SPEM1:spermatid maturation 1 [Gene - OMIM - HGNC]
  • SAT2:spermidine/spermine N1-acetyltransferase family member 2 [Gene - OMIM - HGNC]
  • TRR-TCT2-1:tRNA-Arg (anticodon TCT) 2-1 [Gene - OMIM - HGNC]
  • TRQ-CTG1-5:tRNA-Gln (anticodon CTG) 1-5 [Gene - OMIM - HGNC]
  • TRG-GCC2-6:tRNA-Gly (anticodon GCC) 2-6 [Gene - OMIM - HGNC]
  • TRL-TAG1-1:tRNA-Leu (anticodon TAG) 1-1 [Gene - OMIM - HGNC]
  • TRK-TTT3-5:tRNA-Lys (anticodon TTT) 3-5 [Gene - OMIM - HGNC]
  • TRAPPC1:trafficking protein particle complex subunit 1 [Gene - OMIM - HGNC]
  • TMEM102:transmembrane protein 102 [Gene - OMIM - HGNC]
  • TMEM107:transmembrane protein 107 [Gene - OMIM - HGNC]
  • TMEM256:transmembrane protein 256 [Gene - OMIM - HGNC]
  • TMEM88:transmembrane protein 88 [Gene - OMIM - HGNC]
  • TMEM95:transmembrane protein 95 [Gene - OMIM - HGNC]
  • TP53:tumor protein p53 [Gene - OMIM - HGNC]
  • TNK1:tyrosine kinase non receptor 1 [Gene - OMIM - HGNC]
  • VAMP2:vesicle associated membrane protein 2 [Gene - OMIM - HGNC]
  • ZBTB4:zinc finger and BTB domain containing 4 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
17p13.1
Genomic location:
Chr17: 6934163 - 8217978 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 17p13.1(chr17:6934163-8217978)x1
HGVS:

    Condition(s)

    Name:
    Poly (ADP-Ribose) polymerase inhibitor response
    Synonyms:
    PARP Inhibitor response
    Identifiers:
    MedGen: CN322715

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000734821Oxford Haemato-Oncology Service, Oxford University Hospitals NHS Foundation Trust
    no assertion criteria provided
    drug response
    (Nov 27, 2017)
    Condition: PARP Inhibitor response
    Drug reported used for: Cancer
    somaticclinical testing

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedsomaticyesnot providednot providednot providednot providednot providedclinical testing

    Details of each submission

    From Oxford Haemato-Oncology Service, Oxford University Hospitals NHS Foundation Trust, SCV000734821.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1somaticyesnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Mar 26, 2023