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GRCh37/hg19 10q24.32-24.33(chr10:103891057-105339973)x1 AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 5, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000683260.1

Allele description [Variation Report for GRCh37/hg19 10q24.32-24.33(chr10:103891057-105339973)x1]

GRCh37/hg19 10q24.32-24.33(chr10:103891057-105339973)x1

Genes:
  • NT5C2:5'-nucleotidase, cytosolic II [Gene - OMIM - HGNC]
  • ARL3:ADP ribosylation factor like GTPase 3 [Gene - OMIM - HGNC]
  • ATP5MK:ATP synthase membrane subunit k [Gene - OMIM - HGNC]
  • BORCS7:BLOC-1 related complex subunit 7 [Gene - OMIM - HGNC]
  • CUEDC2:CUE domain containing 2 [Gene - OMIM - HGNC]
  • ELOVL3:ELOVL fatty acid elongase 3 [Gene - OMIM - HGNC]
  • FBXL15:F-box and leucine rich repeat protein 15 [Gene - OMIM - HGNC]
  • PPRC1:PPARG related coactivator 1 [Gene - OMIM - HGNC]
  • SUFU:SUFU negative regulator of hedgehog signaling [Gene - OMIM - HGNC]
  • TAF5:TATA-box binding protein associated factor 5 [Gene - OMIM - HGNC]
  • WBP1L:WW domain binding protein 1 like [Gene - OMIM - HGNC]
  • ACTR1A:actin related protein 1A [Gene - OMIM - HGNC]
  • AS3MT:arsenite methyltransferase [Gene - OMIM - HGNC]
  • CALHM1:calcium homeostasis modulator 1 [Gene - OMIM - HGNC]
  • CALHM3:calcium homeostasis modulator 3 [Gene - OMIM - HGNC]
  • CALHM2:calcium homeostasis modulator family member 2 [Gene - OMIM - HGNC]
  • C10orf95:chromosome 10 open reading frame 95 [Gene - HGNC]
  • CNNM2:cyclin and CBS domain divalent metal cation transport mediator 2 [Gene - OMIM - HGNC]
  • CYP17A1:cytochrome P450 family 17 subfamily A member 1 [Gene - OMIM - HGNC]
  • GBF1:golgi brefeldin A resistant guanine nucleotide exchange factor 1 [Gene - OMIM - HGNC]
  • INA:internexin neuronal intermediate filament protein alpha [Gene - OMIM - HGNC]
  • MFSD13A:major facilitator superfamily domain containing 13A [Gene - HGNC]
  • MIR146B:microRNA 146b [Gene - OMIM - HGNC]
  • NEURL1:neuralized E3 ubiquitin protein ligase 1 [Gene - OMIM - HGNC]
  • NFKB2:nuclear factor kappa B subunit 2 [Gene - OMIM - HGNC]
  • NOLC1:nucleolar and coiled-body phosphoprotein 1 [Gene - OMIM - HGNC]
  • PITX3:paired like homeodomain 3 [Gene - OMIM - HGNC]
  • PSD:pleckstrin and Sec7 domain containing [Gene - OMIM - HGNC]
  • PCGF6:polycomb group ring finger 6 [Gene - OMIM - HGNC]
  • PDCD11:programmed cell death 11 [Gene - OMIM - HGNC]
  • SFXN2:sideroflexin 2 [Gene - OMIM - HGNC]
  • TRIM8:tripartite motif containing 8 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
10q24.32-24.33
Genomic location:
Chr10: 103891057 - 105339973 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 10q24.32-24.33(chr10:103891057-105339973)x1
HGVS:
NC_000010.10:g.(?_103891057)_(105339973_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000810768Quest Diagnostics Nichols Institute San Juan Capistrano
no assertion criteria provided
Likely pathogenic
(Sep 5, 2017)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000810768.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022