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GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 17, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000684530.1

Allele description [Variation Report for GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3]

GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3

Genes:
  • BCR:BCR activator of RhoGEF and GTPase [Gene - OMIM - HGNC]
  • BPIFC:BPI fold containing family C [Gene - OMIM - HGNC]
  • DDTL:D-dopachrome tautomerase like [Gene - HGNC]
  • DDT:D-dopachrome tautomerase [Gene - OMIM - HGNC]
  • DEPDC5:DEP domain containing 5, GATOR1 subcomplex subunit [Gene - OMIM - HGNC]
  • EMID1:EMI domain containing 1 [Gene - OMIM - HGNC]
  • EWSR1:EWS RNA binding protein 1 [Gene - OMIM - HGNC]
  • FBXO7:F-box protein 7 [Gene - OMIM - HGNC]
  • GNAZ:G protein subunit alpha z [Gene - OMIM - HGNC]
  • GRK3:G protein-coupled receptor kinase 3 [Gene - OMIM - HGNC]
  • HORMAD2:HORMA domain containing 2 [Gene - OMIM - HGNC]
  • HPS4:HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 [Gene - OMIM - HGNC]
  • HSCB:HscB mitochondrial iron-sulfur cluster cochaperone [Gene - OMIM - HGNC]
  • KIAA1671:KIAA1671 [Gene - HGNC]
  • LARGE1:LARGE xylosyl- and glucuronyltransferase 1 [Gene - OMIM - HGNC]
  • LHFPL7:LHFPL tetraspan subfamily member 7 [Gene - HGNC]
  • LIF:LIF interleukin 6 family cytokine [Gene - OMIM - HGNC]
  • LIMK2:LIM domain kinase 2 [Gene - OMIM - HGNC]
  • MN1:MN1 proto-oncogene, transcriptional regulator [Gene - OMIM - HGNC]
  • MORC2:MORC family CW-type zinc finger 2 [Gene - OMIM - HGNC]
  • NF2:NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor [Gene - OMIM - HGNC]
  • PATZ1:POZ/BTB and AT hook containing zinc finger 1 [Gene - OMIM - HGNC]
  • PRAME:PRAME nuclear receptor transcriptional regulator [Gene - OMIM - HGNC]
  • RAB36:RAB36, member RAS oncogene family [Gene - OMIM - HGNC]
  • RASL10A:RAS like family 10 member A [Gene - OMIM - HGNC]
  • RFPL1S:RFPL1 antisense RNA 1 [Gene - OMIM - HGNC]
  • RFPL3S:RFPL3 antisense [Gene - OMIM - HGNC]
  • RTCB:RNA 2',3'-cyclic phosphate and 5'-OH ligase [Gene - OMIM - HGNC]
  • SEC14L2:SEC14 like lipid binding 2 [Gene - OMIM - HGNC]
  • SEC14L3:SEC14 like lipid binding 3 [Gene - OMIM - HGNC]
  • SEC14L4:SEC14 like lipid binding 4 [Gene - OMIM - HGNC]
  • SEC14L6:SEC14 like lipid binding 6 [Gene - HGNC]
  • SFI1:SFI1 centrin binding protein [Gene - OMIM - HGNC]
  • SRRD:SRR1 domain containing [Gene - OMIM - HGNC]
  • SMARCB1:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Gene - OMIM - HGNC]
  • TBC1D10A:TBC1 domain family member 10A [Gene - OMIM - HGNC]
  • THOC5:THO complex subunit 5 [Gene - OMIM - HGNC]
  • TIMP3:TIMP metallopeptidase inhibitor 3 [Gene - OMIM - HGNC]
  • VPREB1:V-set pre-B cell surrogate light chain 1 [Gene - OMIM - HGNC]
  • VPREB3:V-set pre-B cell surrogate light chain 3 [Gene - OMIM - HGNC]
  • XBP1:X-box binding protein 1 [Gene - OMIM - HGNC]
  • YWHAH-AS1:YWHAH antisense RNA 1 [Gene - HGNC]
  • ASCC2:activating signal cointegrator 1 complex subunit 2 [Gene - OMIM - HGNC]
  • AP1B1:adaptor related protein complex 1 subunit beta 1 [Gene - OMIM - HGNC]
  • ADORA2A:adenosine A2a receptor [Gene - OMIM - HGNC]
  • ASPHD2:aspartate beta-hydroxylase domain containing 2 [Gene - HGNC]
  • DRICH1:aspartate rich 1 [Gene - HGNC]
  • UPB1:beta-ureidopropionase 1 [Gene - OMIM - HGNC]
  • CABIN1:calcineurin binding protein 1 [Gene - OMIM - HGNC]
  • CABP7:calcium binding protein 7 [Gene - OMIM - HGNC]
  • CHEK2:checkpoint kinase 2 [Gene - OMIM - HGNC]
  • C22orf15:chromosome 22 open reading frame 15 [Gene - HGNC]
  • C22orf31:chromosome 22 open reading frame 31 [Gene - HGNC]
  • C22orf42:chromosome 22 open reading frame 42 [Gene - HGNC]
  • CCDC117:coiled-coil domain containing 117 [Gene - HGNC]
  • CCDC157:coiled-coil domain containing 157 [Gene - OMIM - HGNC]
  • CHCHD10:coiled-coil-helix-coiled-coil-helix domain containing 10 [Gene - OMIM - HGNC]
  • CRYBA4:crystallin beta A4 [Gene - OMIM - HGNC]
  • CRYBB1:crystallin beta B1 [Gene - OMIM - HGNC]
  • CRYBB2:crystallin beta B2 [Gene - OMIM - HGNC]
  • CRYBB3:crystallin beta B3 [Gene - OMIM - HGNC]
  • CASTOR1:cytosolic arginine sensor for mTORC1 subunit 1 [Gene - OMIM - HGNC]
  • DERL3:derlin 3 [Gene - OMIM - HGNC]
  • DRG1:developmentally regulated GTP binding protein 1 [Gene - OMIM - HGNC]
  • DUSP18:dual specificity phosphatase 18 [Gene - OMIM - HGNC]
  • EIF4ENIF1:eukaryotic translation initiation factor 4E nuclear import factor 1 [Gene - OMIM - HGNC]
  • GAL3ST1:galactose-3-O-sulfotransferase 1 [Gene - OMIM - HGNC]
  • GGT1:gamma-glutamyltransferase 1 [Gene - OMIM - HGNC]
  • GGT5:gamma-glutamyltransferase 5 [Gene - OMIM - HGNC]
  • GGTLC2:gamma-glutamyltransferase light chain 2 [Gene - OMIM - HGNC]
  • GSTT1:glutathione S-transferase theta 1 [Gene - OMIM - HGNC]
  • GSTT2:glutathione S-transferase theta 2 (gene/pseudogene) [Gene - OMIM - HGNC]
  • GSTT2B:glutathione S-transferase theta 2B [Gene - HGNC]
  • GAS2L1:growth arrest specific 2 like 1 [Gene - OMIM - HGNC]
  • GUCD1:guanylyl cyclase domain containing 1 [Gene - OMIM - HGNC]
  • IGLC1:immunoglobulin lambda constant 1 [Gene - OMIM - HGNC]
  • IGLL1:immunoglobulin lambda like polypeptide 1 [Gene - OMIM - HGNC]
  • IGLL5:immunoglobulin lambda like polypeptide 5 [Gene - HGNC]
  • INPP5J:inositol polyphosphate-5-phosphatase J [Gene - OMIM - HGNC]
  • KREMEN1:kringle containing transmembrane protein 1 [Gene - OMIM - HGNC]
  • LRRC75B:leucine rich repeat containing 75B [Gene - HGNC]
  • MIF:macrophage migration inhibitory factor [Gene - OMIM - HGNC]
  • MMP11:matrix metallopeptidase 11 [Gene - OMIM - HGNC]
  • MTFP1:mitochondrial fission process 1 [Gene - OMIM - HGNC]
  • MIAT:myocardial infarction associated transcript [Gene - OMIM - HGNC]
  • MYO18B:myosin XVIIIB [Gene - OMIM - HGNC]
  • MTMR3:myotubularin related protein 3 [Gene - OMIM - HGNC]
  • NEFH:neurofilament heavy chain [Gene - OMIM - HGNC]
  • NIPSNAP1:nipsnap homolog 1 [Gene - OMIM - HGNC]
  • OSM:oncostatin M [Gene - OMIM - HGNC]
  • OSBP2:oxysterol binding protein 2 [Gene - OMIM - HGNC]
  • PES1:pescadillo ribosomal biogenesis factor 1 [Gene - OMIM - HGNC]
  • PITPNB:phosphatidylinositol transfer protein beta [Gene - OMIM - HGNC]
  • PISD:phosphatidylserine decarboxylase [Gene - OMIM - HGNC]
  • PIK3IP1:phosphoinositide-3-kinase interacting protein 1 [Gene - OMIM - HGNC]
  • PLA2G3:phospholipase A2 group III [Gene - OMIM - HGNC]
  • PIWIL3:piwi like RNA-mediated gene silencing 3 [Gene - OMIM - HGNC]
  • PRR14L:proline rich 14 like [Gene - HGNC]
  • RSPH14:radial spoke head 14 homolog [Gene - OMIM - HGNC]
  • RGL4:ral guanine nucleotide dissociation stimulator like 4 [Gene - OMIM - HGNC]
  • RFPL1:ret finger protein like 1 [Gene - OMIM - HGNC]
  • RFPL2:ret finger protein like 2 [Gene - OMIM - HGNC]
  • RFPL3:ret finger protein like 3 [Gene - OMIM - HGNC]
  • RHBDD3:rhomboid domain containing 3 [Gene - HGNC]
  • RNF185:ring finger protein 185 [Gene - OMIM - HGNC]
  • RNF215:ring finger protein 215 [Gene - HGNC]
  • SEZ6L:seizure related 6 homolog like [Gene - OMIM - HGNC]
  • SELENOM:selenoprotein M [Gene - OMIM - HGNC]
  • SGSM1:small G protein signaling modulator 1 [Gene - OMIM - HGNC]
  • SNRPD3:small nuclear ribonucleoprotein D3 polypeptide [Gene - OMIM - HGNC]
  • SMTN:smoothelin [Gene - OMIM - HGNC]
  • SLC2A11:solute carrier family 2 member 11 [Gene - OMIM - HGNC]
  • SLC35E4:solute carrier family 35 member E4 [Gene - HGNC]
  • SLC5A1:solute carrier family 5 member 1 [Gene - OMIM - HGNC]
  • SLC5A4:solute carrier family 5 member 4 [Gene - OMIM - HGNC]
  • SPECC1L:sperm antigen with calponin homology and coiled-coil domains 1 like [Gene - OMIM - HGNC]
  • SF3A1:splicing factor 3a subunit 1 [Gene - OMIM - HGNC]
  • SUSD2:sushi domain containing 2 [Gene - OMIM - HGNC]
  • SYN3:synapsin III [Gene - OMIM - HGNC]
  • TUG1:taurine up-regulated 1 [Gene - OMIM - HGNC]
  • TTC28:tetratricopeptide repeat domain 28 [Gene - OMIM - HGNC]
  • TCN2:transcobalamin 2 [Gene - OMIM - HGNC]
  • TFIP11:tuftelin interacting protein 11 [Gene - OMIM - HGNC]
  • YWHAH:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Gene - OMIM - HGNC]
  • TPST2:tyrosylprotein sulfotransferase 2 [Gene - OMIM - HGNC]
  • UQCR10:ubiquinol-cytochrome c reductase, complex III subunit X [Gene - OMIM - HGNC]
  • ZNRF3:zinc and ring finger 3 [Gene - OMIM - HGNC]
  • ZMAT5:zinc finger matrin-type 5 [Gene - OMIM - HGNC]
  • ZNF280A:zinc finger protein 280A [Gene - HGNC]
  • ZNF280B:zinc finger protein 280B [Gene - HGNC]
  • ZNF70:zinc finger protein 70 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
22q11.22-12.3
Genomic location:
Chr22: 22460754 - 35198232 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: CN517202

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000812053Quest Diagnostics Nichols Institute San Juan Capistrano
    no assertion criteria provided
    Pathogenic
    (Jul 17, 2017)
    germlineclinical testing

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

    Details of each submission

    From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV000812053.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Oct 14, 2023