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GRCh37/hg19 2p23.3-21(chr2:24881528-43460021)x3 AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 1, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001532444.9

Allele description

GRCh37/hg19 2p23.3-21(chr2:24881528-43460021)x3

Genes:
  • HAAO:3-hydroxyanthranilate 3,4-dioxygenase [Gene - OMIM - HGNC]
  • AGBL5:AGBL carboxypeptidase 5 [Gene - OMIM - HGNC]
  • ALK:ALK receptor tyrosine kinase [Gene - OMIM - HGNC]
  • ASXL2:ASXL transcriptional regulator 2 [Gene - OMIM - HGNC]
  • BABAM2:BRISC and BRCA1 A complex member 2 [Gene - OMIM - HGNC]
  • CLIP4:CAP-Gly domain containing linker protein family member 4 [Gene - HGNC]
  • CEBPZ:CCAAT enhancer binding protein zeta [Gene - OMIM - HGNC]
  • CDC42EP3:CDC42 effector protein 3 [Gene - OMIM - HGNC]
  • DHX57:DExH-box helicase 57 [Gene - HGNC]
  • DNMT3A:DNA methyltransferase 3 alpha [Gene - OMIM - HGNC]
  • DNAJC27:DnaJ heat shock protein family (Hsp40) member C27 [Gene - OMIM - HGNC]
  • DNAJC5G:DnaJ heat shock protein family (Hsp40) member C5 gamma [Gene - OMIM - HGNC]
  • EFR3B:EFR3 homolog B [Gene - OMIM - HGNC]
  • EHD3:EH domain containing 3 [Gene - OMIM - HGNC]
  • EML4:EMAP like 4 [Gene - OMIM - HGNC]
  • FOSL2:FOS like 2, AP-1 transcription factor subunit [Gene - OMIM - HGNC]
  • GPATCH11:G-patch domain containing 11 [Gene - HGNC]
  • GPN1:GPN-loop GTPase 1 [Gene - OMIM - HGNC]
  • GAREM2:GRB2 associated regulator of MAPK1 subtype 2 [Gene - OMIM - HGNC]
  • HEATR5B:HEAT repeat containing 5B [Gene - OMIM - HGNC]
  • LBH:LBH regulator of WNT signaling pathway [Gene - OMIM - HGNC]
  • MORN2:MORN repeat containing 2 [Gene - HGNC]
  • NDUFAF7:NADH:ubiquinone oxidoreductase complex assembly factor 7 [Gene - OMIM - HGNC]
  • NLRC4:NLR family CARD domain containing 4 [Gene - OMIM - HGNC]
  • RAB10:RAB10, member RAS oncogene family [Gene - OMIM - HGNC]
  • RASGRP3:RAS guanyl releasing protein 3 [Gene - OMIM - HGNC]
  • ARHGEF33:Rho guanine nucleotide exchange factor 33 [Gene - HGNC]
  • SOS1:SOS Ras/Rac guanine nucleotide exchange factor 1 [Gene - OMIM - HGNC]
  • SOS1-IT1:SOS1 intronic transcript 1 [Gene - HGNC]
  • SPATA31H1:SPATA31 subfamily H member 1 [Gene - HGNC]
  • SUPT7L:SPT7 like, STAGA complex subunit gamma [Gene - OMIM - HGNC]
  • THADA:THADA armadillo repeat containing [Gene - OMIM - HGNC]
  • THUMPD2:THUMP domain containing 2 [Gene - OMIM - HGNC]
  • TOGARAM2:TOG array regulator of axonemal microtubules 2 [Gene - HGNC]
  • WDR43:WD repeat domain 43 [Gene - OMIM - HGNC]
  • YIPF4:Yip1 domain family member 4 [Gene - OMIM - HGNC]
  • ZFP36L2:ZFP36 ring finger protein like 2 [Gene - OMIM - HGNC]
  • ABHD1:abhydrolase domain containing 1 [Gene - OMIM - HGNC]
  • ADCY3:adenylate cyclase 3 [Gene - OMIM - HGNC]
  • ADGRF3:adhesion G protein-coupled receptor F3 [Gene - HGNC]
  • ATRAID:all-trans retinoic acid induced differentiation factor [Gene - OMIM - HGNC]
  • ATL2:atlastin GTPase 2 [Gene - OMIM - HGNC]
  • BIRC6:baculoviral IAP repeat containing 6 [Gene - OMIM - HGNC]
  • CIB4:calcium and integrin binding family member 4 [Gene - OMIM - HGNC]
  • CAPN13:calpain 13 [Gene - OMIM - HGNC]
  • CAPN14:calpain 14 [Gene - OMIM - HGNC]
  • CAD:carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Gene - OMIM - HGNC]
  • CGREF1:cell growth regulator with EF-hand domain 1 [Gene - OMIM - HGNC]
  • CENPA:centromere protein A [Gene - OMIM - HGNC]
  • CENPO:centromere protein O [Gene - OMIM - HGNC]
  • CIMIP2C:ciliary microtubule inner protein 2C [Gene - HGNC]
  • CCDC121:coiled-coil domain containing 121 [Gene - HGNC]
  • CDKL4:cyclin dependent kinase like 4 [Gene - HGNC]
  • CRIM1:cysteine rich transmembrane BMP regulator 1 [Gene - OMIM - HGNC]
  • CYP1B1:cytochrome P450 family 1 subfamily B member 1 [Gene - OMIM - HGNC]
  • COX7A2L:cytochrome c oxidase subunit 7A2 like [Gene - OMIM - HGNC]
  • DPYSL5:dihydropyrimidinase like 5 [Gene - OMIM - HGNC]
  • DPY30:dpy-30 histone methyltransferase complex regulatory subunit [Gene - OMIM - HGNC]
  • DRC1:dynein regulatory complex subunit 1 [Gene - OMIM - HGNC]
  • DTNB:dystrobrevin beta [Gene - OMIM - HGNC]
  • EMILIN1:elastin microfibril interfacer 1 [Gene - OMIM - HGNC]
  • EIF2AK2:eukaryotic translation initiation factor 2 alpha kinase 2 [Gene - OMIM - HGNC]
  • EIF2B4:eukaryotic translation initiation factor 2B subunit delta [Gene - OMIM - HGNC]
  • FAM98A:family with sequence similarity 98 member A [Gene - HGNC]
  • FEZ2:fasciculation and elongation protein zeta 2 [Gene - OMIM - HGNC]
  • FNDC4:fibronectin type III domain containing 4 [Gene - OMIM - HGNC]
  • GALM:galactose mutarotase [Gene - OMIM - HGNC]
  • GEMIN6:gem nuclear organelle associated protein 6 [Gene - OMIM - HGNC]
  • GTF3C2:general transcription factor IIIC subunit 2 [Gene - OMIM - HGNC]
  • GCKR:glucokinase regulator [Gene - OMIM - HGNC]
  • QPCT:glutaminyl-peptide cyclotransferase [Gene - OMIM - HGNC]
  • HNRNPLL:heterogeneous nuclear ribonucleoprotein L like [Gene - OMIM - HGNC]
  • HADHA:hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Gene - OMIM - HGNC]
  • HADHB:hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta [Gene - OMIM - HGNC]
  • IFT172:intraflagellar transport 172 [Gene - OMIM - HGNC]
  • KRTCAP3:keratinocyte associated protein 3 [Gene - OMIM - HGNC]
  • KHK:ketohexokinase [Gene - OMIM - HGNC]
  • KIF3C:kinesin family member 3C [Gene - OMIM - HGNC]
  • LTBP1:latent transforming growth factor beta binding protein 1 [Gene - OMIM - HGNC]
  • LINC02898:long intergenic non-protein coding RNA 2898 [Gene - HGNC]
  • LCLAT1:lysocardiolipin acyltransferase 1 [Gene - OMIM - HGNC]
  • MEMO1:mediator of cell motility 1 [Gene - OMIM - HGNC]
  • MTA3:metastasis associated 1 family member 3 [Gene - OMIM - HGNC]
  • MAPRE3:microtubule associated protein RP/EB family member 3 [Gene - OMIM - HGNC]
  • MPV17:mitochondrial inner membrane protein MPV17 [Gene - OMIM - HGNC]
  • MRPL33:mitochondrial ribosomal protein L33 [Gene - OMIM - HGNC]
  • MAP4K3:mitogen-activated protein kinase kinase kinase kinase 3 [Gene - OMIM - HGNC]
  • NRBP1:nuclear receptor binding protein 1 [Gene - OMIM - HGNC]
  • NCOA1:nuclear receptor coactivator 1 [Gene - OMIM - HGNC]
  • OST4:oligosaccharyltransferase complex subunit 4, non-catalytic [Gene - OMIM - HGNC]
  • OTOF:otoferlin [Gene - OMIM - HGNC]
  • OXER1:oxoeicosanoid receptor 1 [Gene - OMIM - HGNC]
  • PTRHD1:peptidyl-tRNA hydrolase domain containing 1 [Gene - OMIM - HGNC]
  • PLB1:phospholipase B1 [Gene - OMIM - HGNC]
  • PCARE:photoreceptor cilium actin regulator [Gene - OMIM - HGNC]
  • GALNT14:polypeptide N-acetylgalactosaminyltransferase 14 [Gene - OMIM - HGNC]
  • KCNK3:potassium two pore domain channel subfamily K member 3 [Gene - OMIM - HGNC]
  • KCNG3:potassium voltage-gated channel modifier subfamily G member 3 [Gene - OMIM - HGNC]
  • PREB:prolactin regulatory element binding [Gene - OMIM - HGNC]
  • PRR30:proline rich 30 [Gene - HGNC]
  • POMC:proopiomelanocortin [Gene - OMIM - HGNC]
  • PRKD3:protein kinase D3 [Gene - OMIM - HGNC]
  • PKDCC:protein kinase domain containing, cytoplasmic [Gene - OMIM - HGNC]
  • PPP1CB:protein phosphatase 1 catalytic subunit beta [Gene - OMIM - HGNC]
  • PPM1G:protein phosphatase, Mg2+/Mn2+ dependent 1G [Gene - OMIM - HGNC]
  • RMDN2:regulator of microtubule dynamics 2 [Gene - OMIM - HGNC]
  • RBKS:ribokinase [Gene - OMIM - HGNC]
  • SELENOI:selenoprotein I [Gene - OMIM - HGNC]
  • SRSF7:serine and arginine rich splicing factor 7 [Gene - OMIM - HGNC]
  • SLC30A3:solute carrier family 30 member 3 [Gene - OMIM - HGNC]
  • SLC30A6:solute carrier family 30 member 6 [Gene - OMIM - HGNC]
  • SLC35F6:solute carrier family 35 member F6 [Gene - OMIM - HGNC]
  • SLC4A1AP:solute carrier family 4 member 1 adaptor protein [Gene - OMIM - HGNC]
  • SLC5A6:solute carrier family 5 member 6 [Gene - OMIM - HGNC]
  • SLC8A1:solute carrier family 8 member A1 [Gene - OMIM - HGNC]
  • SNX17:sorting nexin 17 [Gene - OMIM - HGNC]
  • SPAST:spastin [Gene - OMIM - HGNC]
  • SPDYA:speedy/RINGO cell cycle regulator family member A [Gene - OMIM - HGNC]
  • SRD5A2:steroid 5 alpha-reductase 2 [Gene - OMIM - HGNC]
  • STRN:striatin [Gene - OMIM - HGNC]
  • SULT6B1:sulfotransferase family 6B member 1 [Gene - OMIM - HGNC]
  • TRMT61B:tRNA methyltransferase 61B [Gene - OMIM - HGNC]
  • TTC27:tetratricopeptide repeat domain 27 [Gene - HGNC]
  • TCF23:transcription factor 23 [Gene - OMIM - HGNC]
  • TMEM178A:transmembrane protein 178A [Gene - HGNC]
  • TMEM214:transmembrane protein 214 [Gene - OMIM - HGNC]
  • TRIM54:tripartite motif containing 54 [Gene - OMIM - HGNC]
  • UCN:urocortin [Gene - OMIM - HGNC]
  • VIT:vitrin [Gene - OMIM - HGNC]
  • XDH:xanthine dehydrogenase [Gene - OMIM - HGNC]
  • YPEL5:yippee like 5 [Gene - OMIM - HGNC]
  • ZNF512:zinc finger protein 512 [Gene - HGNC]
  • ZNF513:zinc finger protein 513 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2p23.3-21
Genomic location:
Chr2: 24881528 - 43460021 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2p23.3-21(chr2:24881528-43460021)x3
HGVS:
    Observations:
    1

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: CN517202

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV001748012CeGaT Center for Human Genetics Tuebingen
    criteria provided, single submitter

    (Praxis fuer Humangenetik Tuebingen - Variant Classification Criteria)
    Likely pathogenic
    (Apr 1, 2021)
    germlineclinical testing

    Citation Link

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedgermlineyes1not providednot providednot providednot providedclinical testing

    Details of each submission

    From CeGaT Center for Human Genetics Tuebingen, SCV001748012.9

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1germlineyesnot providednot providednot provided1not providednot providednot provided

    Last Updated: Sep 16, 2023