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NM_001134363.3(RBM20):c.1907G>A (p.Arg636His) AND Dilated cardiomyopathy 1DD

Germline classification:
Pathogenic/Likely pathogenic (5 submissions)
Last evaluated:
Nov 27, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000295.19

Allele description [Variation Report for NM_001134363.3(RBM20):c.1907G>A (p.Arg636His)]

NM_001134363.3(RBM20):c.1907G>A (p.Arg636His)

Gene:
RBM20:RNA binding motif protein 20 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q25.2
Genomic location:
Preferred name:
NM_001134363.3(RBM20):c.1907G>A (p.Arg636His)
Other names:
p.R636H:CGT>CAT
HGVS:
  • NC_000010.11:g.110812304G>A
  • NG_021177.1:g.172908G>A
  • NM_001134363.3:c.1907G>AMANE SELECT
  • NP_001127835.2:p.Arg636His
  • LRG_382t1:c.1907G>A
  • LRG_382:g.172908G>A
  • NC_000010.10:g.112572062G>A
  • NM_001134363.1:c.1907G>A
  • NM_001134363.2:c.1907G>A
  • c.1907G>A
Protein change:
R636H; ARG636HIS
Links:
OMIM: 613171.0004; dbSNP: rs267607004
NCBI 1000 Genomes Browser:
rs267607004
Molecular consequence:
  • NM_001134363.3:c.1907G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Dilated cardiomyopathy 1DD (CMD1DD)
Identifiers:
MONDO: MONDO:0013168; MedGen: C2750995; Orphanet: 154; OMIM: 613172

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020439OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 2010)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV000299266Center for Medical Genetics Ghent, University of Ghent
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Apr 6, 2016)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

SCV000552928Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Nov 27, 2023)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

SCV000611312Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(May 18, 2017)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001499972KTest Genetics, KTest
no assertion criteria provided

(ACMG Guidelines, 2015)
Pathogenicgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in ribonucleic acid binding protein gene cause familial dilated cardiomyopathy.

Brauch KM, Karst ML, Herron KJ, de Andrade M, Pellikka PA, Rodeheffer RJ, Michels VV, Olson TM.

J Am Coll Cardiol. 2009 Sep 1;54(10):930-41. doi: 10.1016/j.jacc.2009.05.038.

PubMed [citation]
PMID:
19712804
PMCID:
PMC2782634

Whole exome sequencing identifies a causal RBM20 mutation in a large pedigree with familial dilated cardiomyopathy.

Wells QS, Becker JR, Su YR, Mosley JD, Weeke P, D'Aoust L, Ausborn NL, Ramirez AH, Pfotenhauer JP, Naftilan AJ, Markham L, Exil V, Roden DM, Hong CC.

Circ Cardiovasc Genet. 2013 Aug;6(4):317-26. doi: 10.1161/CIRCGENETICS.113.000011. Epub 2013 Jul 16.

PubMed [citation]
PMID:
23861363
PMCID:
PMC3895490
See all PubMed Citations (8)

Details of each submission

From OMIM, SCV000020439.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a brother and sister with dilated cardiomyopathy (CMD1DD; 613172) from a family of German ancestry (kindred 'DC-49'), Brauch et al. (2009) identified heterozygosity for a 1907G-A transition in exon 9 of the RBM20 gene, resulting in an arg636-to-his (R636H) substitution at a conserved residue in the RS domain.

In a mother and 2 children (Pedigree E) with CMD, who were of Caucasian and Native American ancestry and were negative for mutation in 14 known CMD-associated genes, Li et al. (2010) identified heterozygosity for a c.1965G-A transition (c.1965G-A, NM_001134363) in exon 9 of the RBM20 gene, resulting in the R636H substitution. The mutation was not found in the dbSNP database or in DNA from 450 Caucasian controls.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Center for Medical Genetics Ghent, University of Ghent, SCV000299266.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV000552928.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 636 of the RBM20 protein (p.Arg636His). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individuals with dilated cardiomyopathy (DCM) (PMID: 19712804, 20590677, 23861363, 24503780, 26084686). It has also been observed to segregate with disease in related individuals. ClinVar contains an entry for this variant (Variation ID: 271). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on RBM20 protein function. This variant disrupts the p.Arg636 amino acid residue in RBM20. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 20590677, 21483645). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. For these reasons, this variant has been classified as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV000611312.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From KTest Genetics, KTest, SCV001499972.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024