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NM_000552.5(VWF):c.2561G>A (p.Arg854Gln) AND von Willebrand disease type 1

Germline classification:
Pathogenic (5 submissions)
Last evaluated:
May 4, 2022
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000321.18

Allele description [Variation Report for NM_000552.5(VWF):c.2561G>A (p.Arg854Gln)]

NM_000552.5(VWF):c.2561G>A (p.Arg854Gln)

Gene:
VWF:von Willebrand factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p13.31
Genomic location:
Preferred name:
NM_000552.5(VWF):c.2561G>A (p.Arg854Gln)
Other names:
p.R854Q
HGVS:
  • NC_000012.12:g.6034812C>T
  • NG_009072.2:g.94859G>A
  • NM_000552.5:c.2561G>AMANE SELECT
  • NM_000552.5:c.2561G>A
  • NP_000543.2:p.Arg854Gln
  • NP_000543.3:p.Arg854Gln
  • LRG_587t1:c.2561G>A
  • LRG_587:g.94859G>A
  • LRG_587p1:p.Arg854Gln
  • NC_000012.11:g.6143978C>T
  • NC_000012.12:g.6034812C>T
  • NG_009072.1:g.94859G>A
  • NM_000552.2:c.2561G>A
  • NM_000552.3:c.2561G>A
  • NM_000552.4:c.2561G>A
  • P04275:p.Arg854Gln
Protein change:
R854Q; ARG854GLN
Links:
UniProtKB: P04275#VAR_005789; OMIM: 613160.0013; dbSNP: rs41276738
NCBI 1000 Genomes Browser:
rs41276738
Molecular consequence:
  • NM_000552.5:c.2561G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
von Willebrand disease type 1 (VWD1)
Synonyms:
VON WILLEBRAND DISEASE, TYPE I; VWD, TYPE 1
Identifiers:
MONDO: MONDO:0008668; MedGen: C1264039; Orphanet: 166078; Orphanet: 903; OMIM: 193400

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020465OMIM
no assertion criteria provided
Pathogenic
(May 1, 2010)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV001142429Reproductive Health Research and Development, BGI Genomics
no assertion criteria provided
Pathogenic
(Jan 6, 2020)
germlinecuration

SCV002500928ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenicgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002519962Mendelics
criteria provided, single submitter

(Mendelics Assertion Criteria 2019)
Pathogenic
(May 4, 2022)
germlineclinical testing

Citation Link,

SCV002556468Genetics and Molecular Pathology, SA Pathology

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jul 13, 2020)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing, curation

Citations

PubMed

The genetic basis of von Willebrand disease.

Goodeve AC.

Blood Rev. 2010 May;24(3):123-34. doi: 10.1016/j.blre.2010.03.003. Epub 2010 Apr 20. Review.

PubMed [citation]
PMID:
20409624

Identification of two point mutations in the von Willebrand factor gene of three families with the 'Normandy' variant of von Willebrand disease.

Gaucher C, Mercier B, Jorieux S, Oufkir D, Mazurier C.

Br J Haematol. 1991 Aug;78(4):506-14.

PubMed [citation]
PMID:
1832934
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000020465.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

Goodeve (2010) noted that mutations in the VWF gene, which were sometimes numbered from the transcription start site of the mature protein, are now 'numbered from the first A of the ATG initiator methionine codon (A = +1) at the start of every protein (Met = +1), with cDNA rather than genomic DNA being commonly used as a reference sequence.' Thus, the mutation originally designated ARG91GLN is now designated ARG854GLN (R854Q).

In a patient with the Normandy type of von Willebrand disease (VWD2N; see 613554), Gaucher et al. (1991) demonstrated compound heterozygosity for the arg53-to-trp mutation (193400.0012) and another C-to-T transition that resulted in a substitution of glutamine for arginine-91. The patient's parents were related as second cousins.

Hilbert et al. (2004) reported 2 unrelated French patients with type 2N VWD who were compound heterozygous for R854Q and another pathogenic mutation (Y795C, 613160.0031 and C804F, 613160.0032, respectively).

Peerlinck et al. (1992) identified a heterozygous A-to-G transition in exon 20 of the VWF gene, resulting in an arg854-to-gln (R854Q) substitution, in a 23-year-old woman with a lifelong history of bleeding and low VWF levels, consistent with von Willebrand disease type 1 (193400). Laboratory studies showed disproportionately low factor VIII (F8; 300841) and decreased binding capacity of VWF for F8. The R854Q substitution occurred in the putative factor VIII-binding domain. All VWF multimers were normal. Neither parent was clinically affected, but laboratory studies showed that the father had partially increased bleeding time and partially decreased VWF antigen. Restriction enzyme analysis indicated that the unaffected mother was also heterozygous for the R854Q mutation, and that the patient had inherited a hypomorphic 'silent' VWF allele from her father. Peerlinck et al. (1992) noted that the inheritance pattern in this family was difficult to determine, but concluded that the presence of the 'silent' allele allowed the clinical expression of the mutated second allele, resulting in a recessive phenotype in the proband. Peerlinck et al. (1992) commented that although the phenotype was similar to that of the 'Normandy' type 2N variant (see 613554), the patient also had quantitatively low VWF and was thus classified as having VWD type 1.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Reproductive Health Research and Development, BGI Genomics, SCV001142429.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided

Description

NM_000552.3:c.2561G>A in the VWF gene has an allele frequency of 0.006 in European (Finnish) subpopulation in the gnomAD database. The p.Arg854Gln (NM_000552.3:c.2561G>A) variant in the VWF gene is the most frequent cause of von Willebrand disease (VWD) type 2N and has been reported previously in the homozygous state or in trans with another pathogenic variant in multiple unrelated individuals with autosomal recessive VWD type 2N (PMID: 1832934; 21371195; 15461624). Functional studies indicate the p.Arg854Gln variant may affect protein function (PMID: 23636243; 23426949). Taken together, we interprete this variant as Pathogenic/Likely pathogenic. ACMG/AMP Criteria applied: PM3_Strong; PS3; PP4.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology, SCV002500928.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

From Mendelics, SCV002519962.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Genetics and Molecular Pathology, SA Pathology, SCV002556468.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The VWF c.2561G>A variant is classified as Pathogenic (PS3, PS4, PP1, PP2, PP3, PP5)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024