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NC_000017.11:g.(?_31094927)_(31377677_?)del AND Neurofibromatosis, type 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 1, 2003
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000389.4

Allele description [Variation Report for NC_000017.11:g.(?_31094927)_(31377677_?)del]

NC_000017.11:g.(?_31094927)_(31377677_?)del

Genes:
  • LOC130060654:ATAC-STARR-seq lymphoblastoid active region 12008 [Gene]
  • LOC130060655:ATAC-STARR-seq lymphoblastoid active region 12009 [Gene]
  • LOC130060656:ATAC-STARR-seq lymphoblastoid active region 12010 [Gene]
  • MIR4733HG:MIR4733 host gene [Gene - HGNC]
  • LOC111811965:NF1 (neurofibromin 1) promoter region [Gene]
  • LOC108281169:NF1 intron 1 Alu-mediated recombination region [Gene]
  • LOC108281170:NF1 intron 2 Alu-mediated recombination region [Gene]
  • LOC108281180:NF1 intron 3 Alu-mediated recombination region [Gene]
  • LOC108281182:NF1 intron 50 Alu-mediated recombination region [Gene]
  • LOC108281181:NF1 intron 8 Alu-mediated recombination region [Gene]
  • LOC125177454:Sharpr-MPRA regulatory region 6872 [Gene]
  • EVI2A:ecotropic viral integration site 2A [Gene - OMIM - HGNC]
  • EVI2B:ecotropic viral integration site 2B [Gene - OMIM - HGNC]
  • OMG:oligodendrocyte myelin glycoprotein [Gene - OMIM - HGNC]
  • NF1:neurofibromin 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q11.2
Genomic location:
Chr17: 31094927 - 31377677 (on Assembly GRCh38)
Preferred name:
NC_000017.11:g.(?_31094927)_(31377677_?)del
Other names:
NF1, DEL
HGVS:
  • NC_000017.11:(?_31094927)_(31377677_?)del
  • NC_000017.11:g.(?_31094927)_(31377677_?)del
Note:
NCBI staff provided an HGVS expression for allelic variant 613113.0030 based on the description as a deletion including the complete gene. The location on GRCh38 (annotation release RS_2023_03) was used to define the boundary of the gene.
Nucleotide change:
DEL
Links:
OMIM: 613113.0030

Condition(s)

Name:
Neurofibromatosis, type 1 (NF1)
Synonyms:
NEUROFIBROMATOSIS, TYPE I; Recklinghausen's disease; Von Recklinghausen disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0018975; MedGen: C0027831; Orphanet: 636; OMIM: 162200

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000020533OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2003)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Three different pathological lesions in the NF1 gene originating de novo in a family with neurofibromatosis type 1.

Upadhyaya M, Majounie E, Thompson P, Han S, Consoli C, Krawczak M, Cordeiro I, Cooper DN.

Hum Genet. 2003 Jan;112(1):12-7. Epub 2002 Oct 9.

PubMed [citation]
PMID:
12483293

Details of each submission

From OMIM, SCV000020533.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Upadhyaya et al. (2003) described a Portuguese family in which 3 members had clinical features of neurofibromatosis type I (NF1; 162200) and each had a different underlying defect in the NF1 gene. A 12-year-old boy who had multiple cafe-au-lait spots on his trunk and legs as well as developmental delay had a heterozygous 1.5-Mb deletion including the entire NF1 gene. The mutation was associated with the maternally derived chromosomal haplotype. His 10-year-old brother, who exhibited multiple cafe-au-lait spots and macrocephaly but whose development was within the normal range, was heterozygous for a CGA-to-TGA transition in exon 22 of the NF1 gene, resulting in an arg1241-to-ter mutation (613113.0031). This mutation had previously been described; its recurrence was thought to have been mediated by 5-methylcytosine deamination because it occurred in a hypermutable CpG dinucleotide. The brothers' 26-year-old female first cousin once removed (a first cousin of their father) exhibited multiple cafe-au-lait spots, bilateral Lisch nodules, and multiple dermal neurofibromas. She also showed severe scoliosis and several plexiform neurofibromas in the clavicular region, but her development was within the normal range. She was found to carry a frameshift mutation, 5406insT (613113.0032), in exon 29 of the NF1 gene. None of the parents had any clinical evidence of NF1 and none had a mutation in the NF1 gene. There was also no evidence of mosaicism. Upadhyaya et al. (2003) speculated about the mechanism of this unusual situation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 15, 2024