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NM_017780.4(CHD7):c.4795C>T (p.Gln1599Ter) AND CHARGE association

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 1, 2008
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000002118.2

Allele description [Variation Report for NM_017780.4(CHD7):c.4795C>T (p.Gln1599Ter)]

NM_017780.4(CHD7):c.4795C>T (p.Gln1599Ter)

Gene:
CHD7:chromodomain helicase DNA binding protein 7 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q12.2
Genomic location:
Preferred name:
NM_017780.4(CHD7):c.4795C>T (p.Gln1599Ter)
HGVS:
  • NC_000008.11:g.60841997C>T
  • NG_007009.1:g.168218C>T
  • NM_001316690.1:c.1717-20232C>T
  • NM_017780.4:c.4795C>TMANE SELECT
  • NP_060250.2:p.Gln1599Ter
  • LRG_176t1:c.4795C>T
  • LRG_176:g.168218C>T
  • LRG_176p1:p.Gln1599Ter
  • NC_000008.10:g.61754556C>T
  • NM_017780.2:c.4795C>T
  • NM_017780.3:c.4795C>T
Protein change:
Q1599*; GLN1599TER
Links:
OMIM: 608892.0017; dbSNP: rs267606724
NCBI 1000 Genomes Browser:
rs267606724
Molecular consequence:
  • NM_001316690.1:c.1717-20232C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_017780.4:c.4795C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
CHARGE association (CHARGE)
Synonyms:
CHARGE ASSOCIATION--COLOBOMA, HEART ANOMALY, CHOANAL ATRESIA, RETARDATION, GENITAL AND EAR ANOMALIES; CHARGE syndrome; Coloboma, heart anomaly, choanal atresia, retardation, genital and ear anomalies; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008965; MedGen: C0265354; Orphanet: 138; OMIM: 214800

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000022276OMIM
no assertion criteria provided
Pathogenic
(Oct 1, 2008)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A familial CHARGE syndrome with a CHD7 nonsense mutation and new clinical features.

Vuorela PE, Penttinen MT, Hietala MH, Laine JO, Huoponen KA, Kääriäinen HA.

Clin Dysmorphol. 2008 Oct;17(4):249-53. doi: 10.1097/MCD.0b013e328306a704.

PubMed [citation]
PMID:
18978652

Details of each submission

From OMIM, SCV000022276.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 3 members of a Finnish family with CHARGE syndrome (214800), Vuorela et al. (2008) identified a 4795C-T transition in exon 21 of the CHD7 gene, resulting in a gln1599-to-ter (Q1599X) substitution. The male infant proband and a male fetus from a second pregnancy both had absence of the olfactory bulbs in addition to other features consistent with CHARGE syndrome. The male infant, who died at 3 months of age, also had marked isomerism of the liver with significant symmetry of the right side-appearing lobes and a midline gallbladder, as well as extrahepatic bile duct obstruction and significant hyporotation of the intestines. Their father, in whom the mutation was found in peripheral blood lymphocytes and in buccal cells, had minimal findings, with left-sided conductive hearing loss, a dysplastic, cup-shaped right external ear, slightly asymmetric face, and nonspecific degenerative retinal lesion of the right eye. The father's parents and brother did not carry the mutation, suggesting the mutation occurred de novo in the father, and his brother also had mild asymmetric hearing loss and a mildly dysplastic left external ear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 22, 2022