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NM_000487.6(ARSA):c.542T>G (p.Ile181Ser) AND Metachromatic leukodystrophy, adult type

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 1, 2002
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000003203.3

Allele description [Variation Report for NM_000487.6(ARSA):c.542T>G (p.Ile181Ser)]

NM_000487.6(ARSA):c.542T>G (p.Ile181Ser)

Gene:
ARSA:arylsulfatase A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.33
Genomic location:
Preferred name:
NM_000487.6(ARSA):c.542T>G (p.Ile181Ser)
Other names:
I179S
HGVS:
  • NC_000022.11:g.50626976A>C
  • NG_009260.2:g.6204T>G
  • NM_000487.6:c.542T>GMANE SELECT
  • NM_001085425.3:c.542T>G
  • NM_001085426.3:c.542T>G
  • NM_001085427.3:c.542T>G
  • NM_001085428.3:c.284T>G
  • NM_001362782.2:c.284T>G
  • NP_000478.3:p.Ile181Ser
  • NP_001078894.2:p.Ile181Ser
  • NP_001078895.2:p.Ile181Ser
  • NP_001078896.2:p.Ile181Ser
  • NP_001078897.1:p.Ile95Ser
  • NP_001349711.1:p.Ile95Ser
  • NC_000022.10:g.51065404A>C
  • NM_000487.4:c.536T>G
  • NM_000487.5:c.542T>G
  • p.Ile181Ser
Note:
NCBI staff reviewed the sequence information reported in PubMed 1684088 to determine the location of this allele on current reference sequence.
Protein change:
I181S; ILE179SER
Links:
OMIM: 607574.0008; dbSNP: rs74315457
NCBI 1000 Genomes Browser:
rs74315457
Molecular consequence:
  • NM_000487.6:c.542T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001085425.3:c.542T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001085426.3:c.542T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001085427.3:c.542T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001085428.3:c.284T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001362782.2:c.284T>G - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
loss_of_function_variant [Sequence Ontology: SO:0002054] - Comment(s)

Condition(s)

Name:
Metachromatic leukodystrophy, adult type
Synonyms:
Metachromatic leukodystrophy, adult form
Identifiers:
MONDO: MONDO:0017730; MedGen: C0751279

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000023361OMIM
no assertion criteria provided
Pathogenic
(May 1, 2002)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Two new arylsulfatase A (ARSA) mutations in a juvenile metachromatic leukodystrophy (MLD) patient.

Fluharty AL, Fluharty CB, Bohne W, von Figura K, Gieselmann V.

Am J Hum Genet. 1991 Dec;49(6):1340-50.

PubMed [citation]
PMID:
1684088
PMCID:
PMC1686463

High prevalence of I179S mutation in patients with late-onset metachromatic leukodystrophy.

Lugowska A, Berger J, Tylki-Szymañska A, Czartoryska B, Löschl B, Molzer B.

Clin Genet. 2002 May;61(5):389-90. No abstract available.

PubMed [citation]
PMID:
12081727
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000023361.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a patient with juvenile-onset metachromatic leukodystrophy (250100), Fluharty et al. (1991) identified a T-to-G transversion at nucleotide 799, resulting in a change from isoleucine to serine in exon 3. They designated this mutation E3P799 according to the following scheme: location in the gene, e.g., E3 = exon 3 or its immediately adjacent splice-recognition sequence; type of alteration, e.g., P = point mutation leading to amino acid substitution, or S = mutation in splice recognition sequence; and number of initial nucleotide in the altered sequence, e.g., 799 = 799th nucleotide beyond start of initiation codon.

Lugowska et al. (2002) pointed out that this mutation, designated I179S in the accepted terminology, had been described in 15 of 130 MLD patients in the literature. All of them were found to have been heterozygous for this mutation. Lugowska et al. (2002) stated that, according to the Hardy-Weinberg law for 2 alleles, 1 homozygote I179S/I179S among 12 late juveniles and adults studied by them should have been found. Thus, they speculated that the residual ARSA activity in an I179S homozygote might be similar to that found in an individual homozygous for the ARSA pseudodeficiency allele (607574.0001) who does not present with clinical symptoms of classic MLD.

In 2 Italian patients with metachromatic leukodystrophy, one with adult onset and the other with juvenile onset, Gomez-Lira et al. (1998) identified compound heterozygosity for mutations in the ARSA gene. Both carried the I179S mutation (607574.0008); the patient with juvenile onset had the common 459+1G-A (607574.0003) mutation, and the patient with adult onset had a pro135-to-leu mutation (607574.0042).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024