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NM_013382.7(POMT2):c.1997A>G (p.Tyr666Cys) AND Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A2

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Oct 30, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000003377.12

Allele description [Variation Report for NM_013382.7(POMT2):c.1997A>G (p.Tyr666Cys)]

NM_013382.7(POMT2):c.1997A>G (p.Tyr666Cys)

Gene:
POMT2:protein O-mannosyltransferase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q24.3
Genomic location:
Preferred name:
NM_013382.7(POMT2):c.1997A>G (p.Tyr666Cys)
Other names:
Y666C; p.Y666C:TAC>TGC; NM_013382.5(POMT2):c.1997A>G(p.Tyr666Cys)
HGVS:
  • NC_000014.9:g.77278764T>C
  • NG_008897.1:g.47119A>G
  • NM_013382.7:c.1997A>GMANE SELECT
  • NP_037514.2:p.Tyr666Cys
  • NP_037514.2:p.Tyr666Cys
  • LRG_844t1:c.1997A>G
  • LRG_844:g.47119A>G
  • LRG_844p1:p.Tyr666Cys
  • NC_000014.8:g.77745107T>C
  • NM_013382.5:c.1997A>G
  • Q9UKY4:p.Tyr666Cys
Protein change:
TYR666CYS
Links:
UniProtKB: Q9UKY4#VAR_065045; OMIM: 607439.0004; dbSNP: rs200198778
NCBI 1000 Genomes Browser:
rs200198778
Molecular consequence:
  • NM_013382.7:c.1997A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A2
Synonyms:
MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE ANOMALIES), TYPE A, 2; WALKER-WARBURG SYNDROME OR MUSCLE-EYE-BRAIN DISEASE, POMT2-RELATED; Congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies, type A2
Identifiers:
MONDO: MONDO:0013154; MedGen: C3150411; Orphanet: 588; Orphanet: 899; OMIM: 613150

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000023535OMIM
no assertion criteria provided
Pathogenic
(Jul 1, 2009)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV004204084Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Oct 30, 2023)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

New POMT2 mutations causing congenital muscular dystrophy: identification of a founder mutation.

Yanagisawa A, Bouchet C, Van den Bergh PY, Cuisset JM, Viollet L, Leturcq F, Romero NB, Quijano-Roy S, Fardeau M, Seta N, Guicheney P.

Neurology. 2007 Sep 18;69(12):1254-60. Epub 2007 Jul 18.

PubMed [citation]
PMID:
17634419

Refining genotype phenotype correlations in muscular dystrophies with defective glycosylation of dystroglycan.

Godfrey C, Clement E, Mein R, Brockington M, Smith J, Talim B, Straub V, Robb S, Quinlivan R, Feng L, Jimenez-Mallebrera C, Mercuri E, Manzur AY, Kinali M, Torelli S, Brown SC, Sewry CA, Bushby K, Topaloglu H, North K, Abbs S, Muntoni F.

Brain. 2007 Oct;130(Pt 10):2725-35. Epub 2007 Sep 18.

PubMed [citation]
PMID:
17878207
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000023535.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In 2 unrelated patients with congenital muscular dystrophy and severe mental retardation (MDDGB2; 613156), Yanagisawa et al. (2007) identified a homozygous 1997A-G transition in exon 19 of the POMT2 gene, resulting in a tyr666-to-cys (Y666C) substitution in a highly conserved residue. The patients were of Moroccan and French descent, respectively. Haplotype analysis indicated a founder effect. Two additional patients with a similar phenotype were compound heterozygous for Y666C and another pathogenic POMT2 mutation (W647X; 607439.0005 and W748R; 607439.0006).

Godfrey et al. (2007) identified a homozygous Y666C substitution in 2 sibs with congenital muscular dystrophy and low IQ. Both patients had onset in infancy and increased serum creatine kinase. One achieved walking, the other sitting. One had contractures, muscle hypertrophy, and microcephaly. The other had hypoplastic cerebellum, micropenis, and cryptorchidism.

Godfrey et al. (2007) identified a homozygous Y666C mutation in a patient classified as having muscle-eye-brain disease (MDDGA2; 613150). The patient, who reportedly had onset at age 4 years, never achieved walking, and had increased serum creatine kinase, muscle hypertrophy, microcephaly, low IQ, and encephalocele. Two additional patients with muscle-eye-brain disease were compound heterozygous for Y666C and another pathogenic POMT2 mutation (see, e.g., R413P; 607439.0007).

Mercuri et al. (2009) identified compound heterozygosity for Y666C and G246D (607439.0016) in an Italian patient with congenital muscular dystrophy, microcephaly, mental retardation, but normal brain MRI with minimal white matter changes.

Yanagisawa et al. (2009) reported 3 unrelated French patients who were compound heterozygous for the Y666C mutation and another pathogenic mutation in the POMT2 gene. Two patients with MDDGB2 were compound heterozygous for Y666C and another pathogenic mutation (see, e.g., 607439.0017), whereas the third had the more severe MDDGA2 phenotype and carried Y666C and a deletion of several exons of the POMT2 gene.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Baylor Genetics, SCV004204084.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024