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NM_000152.5(GAA):c.-32-13T>G AND Glycogen storage disease II, adult form

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 1, 2007
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000004242.10

Allele description [Variation Report for NM_000152.5(GAA):c.-32-13T>G]

NM_000152.5(GAA):c.-32-13T>G

Gene:
GAA:alpha glucosidase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q25.3
Genomic location:
Preferred name:
NM_000152.5(GAA):c.-32-13T>G
Other names:
IVS1-13T>G
HGVS:
  • NC_000017.11:g.80104542T>G
  • NG_009822.1:g.7987T>G
  • NM_000152.5:c.-32-13T>GMANE SELECT
  • NM_001079803.3:c.-32-13T>G
  • NM_001079804.3:c.-32-13T>G
  • LRG_673t1:c.-32-13T>G
  • LRG_673:g.7987T>G
  • NC_000017.10:g.78078341T>G
  • NM_000152.3:c.-32-13T>G
  • NM_000152.4:c.-32-13T>G
  • NM_001079803.1:c.-32-13T>G
  • NM_001079804.3:c.-32-13T>G
Nucleotide change:
IVS1AS, T-G, -13
Links:
OMIM: 606800.0006; dbSNP: rs386834236
NCBI 1000 Genomes Browser:
rs386834236
Molecular consequence:
  • NM_000152.5:c.-32-13T>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001079803.3:c.-32-13T>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001079804.3:c.-32-13T>G - intron variant - [Sequence Ontology: SO:0001627]
Functional consequence:
  • Unknown function
  • unknown functional consequence

Condition(s)

Name:
Glycogen storage disease II, adult form
Identifiers:
MedGen: C4016981

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000024408OMIM
no assertion criteria provided
Pathogenic
(Sep 1, 2007)
germlineliterature only

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Aberrant splicing in adult onset glycogen storage disease type II (GSDII): molecular identification of an IVS1 (-13T-->G) mutation in a majority of patients and a novel IVS10 (+1GT-->CT) mutation.

Huie ML, Chen AS, Tsujino S, Shanske S, DiMauro S, Engel AG, Hirschhorn R.

Hum Mol Genet. 1994 Dec;3(12):2231-6.

PubMed [citation]
PMID:
7881425

Leaky splicing mutation in the acid maltase gene is associated with delayed onset of glycogenosis type II.

Boerkoel CF, Exelbert R, Nicastri C, Nichols RC, Miller FW, Plotz PH, Raben N.

Am J Hum Genet. 1995 Apr;56(4):887-97.

PubMed [citation]
PMID:
7717400
PMCID:
PMC1801206
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000024408.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (7)

Description

In 2 patients with the adult-onset form of glycogen storage disease II (GSD2; 232300), Huie et al. (1994) identified a T-to-G transversion at position -13 of the acceptor site of intron 1 of the GAA gene, resulting in alternatively spliced transcripts with deletion of the first coding exon, exon 2. Boerkoel et al. (1995) reported an adult woman heterozygous for this mutation with a low level of active enzyme (12% of normal) that was generated from the leakage of normally spliced mRNA and sustained the patient to adult life. The patient was a genetic compound for deletion of exon 18 of the GAA gene (606800.0012).

Kroos et al. (1995) identified the IVS1 splice site mutation in 38 of 50 heterozygous persons with the adult form of GSD II and in 4 of 13 heterozygous patients with the juvenile form, but did not find the mutation in patients with the infantile form. Patients with deletion of exon 18 or deletion of 525T (606800.0014) in combination with the IVS1-13T-G transversion had the juvenile or the adult form, suggesting that the intronic mutation was a mild mutation.

Among 40 Italian patients with late-onset GSD II, Montalvo et al. (2006) identified 26 different mutations, including 12 novel mutations, in the GAA gene. The most common mutation was IVS1-13T-G, present in heterozygosity in 34 (85%) of 40 patients (allele frequency 42.3%).

Kroos et al. (2007) reported 98 Caucasian GSD II patients who were compound heterozygous for the -13T-G transversion and a second fully deleterious mutation in the GAA gene. None had the infantile form of the disease, but age at onset ranged from less than 1 to 52 years. Alpha-glucosidase activity ranged from about 3 to 20% of normal, and clinical features varied far more than anticipated, although the disease course in general was slowly progressive. Twelve different -13T-G haplotypes were identified.

Gort et al. (2007) identified the -13T-G mutation in 25% of mutant alleles from 22 Spanish patients with GSD II. All had the same haplotype, indicating a founder effect.

In a cohort of 84 patients with Pompe disease who carried the common IVS1-13T-G mutation, Herbert et al. (2019) identified 4 patients who were compound heterozygous for a different second GAA mutation and had onset of clinical symptoms before age 2 years (range, 10 days to 20 months). Herbert et al. (2019) concluded that despite the prior impression that this common mutation leads to milder, adult-onset disease, it can lead to early-onset symptoms.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2024