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NM_000113.3(TOR1A):c.613T>A (p.Phe205Ile) AND Dystonia 1, torsion, late-onset

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 1, 2014
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000005491.13

Allele description [Variation Report for NM_000113.3(TOR1A):c.613T>A (p.Phe205Ile)]

NM_000113.3(TOR1A):c.613T>A (p.Phe205Ile)

Gene:
TOR1A:torsin family 1 member A [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.11
Genomic location:
Preferred name:
NM_000113.3(TOR1A):c.613T>A (p.Phe205Ile)
HGVS:
  • NC_000009.12:g.129818752A>T
  • NG_008049.1:g.10411T>A
  • NM_000113.3:c.613T>AMANE SELECT
  • NP_000104.1:p.Phe205Ile
  • LRG_1029t1:c.613T>A
  • LRG_1029:g.10411T>A
  • LRG_1029p1:p.Phe205Ile
  • NC_000009.11:g.132581031A>T
  • NM_000113.2:c.613T>A
  • O14656:p.Phe205Ile
Protein change:
F205I; PHE205ILE
Links:
UniProtKB: O14656#VAR_070932; OMIM: 605204.0004; dbSNP: rs267607134
NCBI 1000 Genomes Browser:
rs267607134
Molecular consequence:
  • NM_000113.3:c.613T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Dystonia 1, torsion, late-onset
Identifiers:
MedGen: C4016920

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000025673OMIM
no assertion criteria provided
Pathogenic
(Sep 1, 2014)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Functional evidence implicating a novel TOR1A mutation in idiopathic, late-onset focal dystonia.

Calakos N, Patel VD, Gottron M, Wang G, Tran-Viet KN, Brewington D, Beyer JL, Steffens DC, Krishnan RR, Züchner S.

J Med Genet. 2010 Sep;47(9):646-50. doi: 10.1136/jmg.2009.072082. Epub 2009 Dec 2.

PubMed [citation]
PMID:
19955557
PMCID:
PMC2891583

Biochemical and cellular analysis of human variants of the DYT1 dystonia protein, TorsinA/TOR1A.

Hettich J, Ryan SD, de Souza ON, Saraiva Macedo Timmers LF, Tsai S, Atai NA, da Hora CC, Zhang X, Kothary R, Snapp E, Ericsson M, Grundmann K, Breakefield XO, Nery FC.

Hum Mutat. 2014 Sep;35(9):1101-13. doi: 10.1002/humu.22602. Epub 2014 Jul 17.

PubMed [citation]
PMID:
24930953
PMCID:
PMC4134760

Details of each submission

From OMIM, SCV000025673.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a man with late-onset focal torsion dystonia (DYT1; 128100) of the oromandibular region, Calakos et al. (2010) identified a heterozygous 613T-A transversion in exon 3 of the TOR1A gene, resulting in a phe205-to-ile (F205I) substitution in a highly conserved residue in the beta-strand motif in the AAA domain. The mutation was not found in 1,600 control chromosomes. The patient had onset of involuntary jaw movements and grimacing in his fifth decade. Neurologic examination showed cogwheel tone without rigidity and mild action tremor in the upper limbs, as well as absent ankle reflexes. He had a history of bipolar disorder, treatment with lithium, and remote history of treatment with a dopamine receptor blocking agent. There was a family history of tremor and depression, but no family history of dystonia. In vitro functional expression studies in cultured cells showed that the F205I-mutant protein produced TOR1A inclusion bodies that colocalized with the endoplasmic reticulum in about 44% of cells. Transfection of the common GAGdel mutation (605204.0001) produced inclusions in 79% of cells, and wildtype TOR1A produced inclusions in about 10% of cells. The findings suggested that the F205I mutation had impaired function that differed from the GAGdel mutation, and that F205I may contribute to the milder phenotype in this patient.

In vitro cellular expression studies by Hettich et al. (2014) indicated that the F205I mutant protein had an increased tendency to dimerize in the absence of reducing conditions, caused reduced processing of several proteins through the intracellular secretory pathway, decreased neurite extension, and caused vacuolization and morphologic changes in the endoplasmic reticulum and nuclear envelope compared to wildtype.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024