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NM_002335.4(LRP5):c.724G>A (p.Ala242Thr) AND Worth disease

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Nov 9, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000006660.6

Allele description [Variation Report for NM_002335.4(LRP5):c.724G>A (p.Ala242Thr)]

NM_002335.4(LRP5):c.724G>A (p.Ala242Thr)

Gene:
LRP5:LDL receptor related protein 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.2
Genomic location:
Preferred name:
NM_002335.4(LRP5):c.724G>A (p.Ala242Thr)
HGVS:
  • NC_000011.10:g.68363784G>A
  • NG_015835.2:g.56145G>A
  • NM_001291902.2:c.-1042G>A
  • NM_002335.4:c.724G>AMANE SELECT
  • NP_002326.2:p.Ala242Thr
  • NC_000011.9:g.68131252G>A
  • NG_015835.1:g.56145G>A
  • NM_002335.2:c.724G>A
  • O75197:p.Ala242Thr
Protein change:
A242T; ALA242THR
Links:
UniProtKB: O75197#VAR_021812; OMIM: 603506.0015; dbSNP: rs121908670
NCBI 1000 Genomes Browser:
rs121908670
Molecular consequence:
  • NM_001291902.2:c.-1042G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_002335.4:c.724G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Worth disease
Synonyms:
Osteosclerosis, autosomal dominant; Endosteal hyperostosis, autosomal dominant; Endosteal hyperostosis, Worth type; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007764; MedGen: C0432273; OMIM: 144750

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000026843OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 2003)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

SCV001934303Institute of Human Genetics, University of Leipzig Medical Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Nov 9, 2020)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Six novel missense mutations in the LDL receptor-related protein 5 (LRP5) gene in different conditions with an increased bone density.

Van Wesenbeeck L, Cleiren E, Gram J, Beals RK, BĂ©nichou O, Scopelliti D, Key L, Renton T, Bartels C, Gong Y, Warman ML, De Vernejoul MC, Bollerslev J, Van Hul W.

Am J Hum Genet. 2003 Mar;72(3):763-71. Epub 2003 Feb 10.

PubMed [citation]
PMID:
12579474
PMCID:
PMC1180253

Dominant endosteal hyperostosis. Skeletal characteristics and review of the literature.

Beals RK, McLoughlin SW, Teed RL, McDonald C.

J Bone Joint Surg Am. 2001 Nov;83(11):1643-9. Review. No abstract available.

PubMed [citation]
PMID:
11701785
See all PubMed Citations (6)

Details of each submission

From OMIM, SCV000026843.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

Van Wesenbeeck et al. (2003) described a 724G-A transition in exon 4 of the LRP5 gene, resulting in an ala242-to-thr (A242T) mutation, in 2 previously described families (kindreds A and B) from Portland, Oregon (Beals, 1976; Beals et al., 2001) in which members were affected with autosomal dominant endosteal hyperostosis (144750). The condition is characterized by cortical thickening of the long bones, with no alteration in external shape, and a remarkable resistance of the bone to fracture. The skeleton was normal in childhood; the affected patients had a normal height, proportion, intelligence, and longevity. Facial metamorphoses occurred in adolescence, as the forehead flattened, the mandible became elongated, and the gonial angle decreased. Torus palatinus developed in the hard palate, which could lead to malocclusion or loss of teeth. The clinical and radiographic features closely resembled those of the kindred described by Boyden et al. (2002), in whom a gly171-to-val mutation (G171V; 603506.0013) was identified. The A242T mutation was also present in a previously described Sardinian family (kindred D; Scopelliti et al., 1999) in which at least 5 members had osteosclerosis of the skull and enlarged mandible. The mutation was also present in a French family in which an affected proband and his brother had autosomal dominant osteopetrosis type I (OPTA1; 607634), osteomyelitis of the jaw, and hearing problems because of small auditory canals. X-rays showed diffuse osteosclerosis of the trabecular and cortical bone and osteosclerosis of the skull with enlargement of the cranial vault.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Institute of Human Genetics, University of Leipzig Medical Center, SCV001934303.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024