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NG_012130.1:g.(?_5165)_(7623_?)del AND Waardenburg syndrome type 2D

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 1, 2002
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000007932.7

Allele description

NG_012130.1:g.(?_5165)_(7623_?)del

Gene:
SNAI2:snail family transcriptional repressor 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
8q11.21
Genomic location:
Preferred name:
NG_012130.1:g.(?_5165)_(7623_?)del
Other names:
SNAI2, DEL
HGVS:
  • NC_000008.11:g.(?_48918807)_(48921265_?)del
  • NG_012130.1:g.(?_5165)_(7623_?)del
  • LRG_1359:g.(?_5165)_(7623_?)del
  • NC_000008.10:g.(?_49831366)_(49833824_?)del
Nucleotide change:
DEL
Links:
OMIM: 602150.0001

Condition(s)

Name:
Waardenburg syndrome type 2D (WS2D)
Synonyms:
WAARDENBURG SYNDROME, TYPE IID
Identifiers:
MONDO: MONDO:0012144; MedGen: C1837203; Orphanet: 3440; OMIM: 608890

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028137OMIM
no assertion criteria provided
Uncertain significance
(Dec 1, 2002)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Does SNAI2 mutation cause human piebaldism and Waardenburg syndrome?

Mirhadi S, Spritz RA, Moss C.

Am J Med Genet A. 2020 Dec;182(12):3074-3075. doi: 10.1002/ajmg.a.61887. Epub 2020 Sep 25. No abstract available.

PubMed [citation]
PMID:
32975012

SLUG (SNAI2) deletions in patients with Waardenburg disease.

Sánchez-Martín M, Rodríguez-García A, Pérez-Losada J, Sagrera A, Read AP, Sánchez-García I.

Hum Mol Genet. 2002 Dec 1;11(25):3231-6.

PubMed [citation]
PMID:
12444107

Details of each submission

From OMIM, SCV000028137.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

This variant, formerly titled WAARDENBURG SYNDROME, TYPE 2D, based on the report of Sanchez-Martin et al. (2002), has been reclassified based on the report of Mirhadi et al. (2020).

In 2 of 38 unrelated patients with Waardenburg syndrome (W2; see 193510) and no mutation in the MITF gene, Sanchez-Martin et al. (2002) detected homozygous deletions spanning the entire coding region of the SNAI2 gene. One patient (patient B), a 15-year-old girl born of nonconsanguineous, unaffected parents of Bangladeshi origin, had 4 unaffected sibs. The other patient (patient D) was a 3-year-old boy of nonconsanguineous, unaffected Dutch parents.

Mirhadi et al. (2020) called into the question the findings of Sanchez-Martin et al. (2002) and suggested that the findings may have been a result of a technical artifact. They cited the unpublished observation of a child with a heterozygous 1.7-Mb 8q11.1q11.21 deletion that included the entire SNAI2 gene whose clinical phenotype did not include pigmentation anomalies, deafness, or dysmorphia that would be suggestive of either Waardenburg syndrome or piebaldism.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 27, 2023