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NM_000350.3(ABCA4):c.4539+1G>T AND Retinitis pigmentosa 19

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 1, 1998
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000008343.5

Allele description [Variation Report for NM_000350.3(ABCA4):c.4539+1G>T]

NM_000350.3(ABCA4):c.4539+1G>T

Gene:
ABCA4:ATP binding cassette subfamily A member 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p22.1
Genomic location:
Preferred name:
NM_000350.3(ABCA4):c.4539+1G>T
HGVS:
  • NC_000001.11:g.94029444C>A
  • NG_009073.2:g.96704G>T
  • NM_000350.3:c.4539+1G>TMANE SELECT
  • NC_000001.10:g.94495000C>A
  • NG_009073.1:g.96706G>T
  • NM_000350.2:c.4539+1G>T
Nucleotide change:
IVS30DS, G-T, +1
Links:
OMIM: 601691.0009; dbSNP: rs61751388
NCBI 1000 Genomes Browser:
rs61751388
Molecular consequence:
  • NM_000350.3:c.4539+1G>T - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Retinitis pigmentosa 19 (RP19)
Synonyms:
ABCA4-Related Retinitis Pigmentosa
Identifiers:
MONDO: MONDO:0011137; MedGen: C1866422; Orphanet: 791; OMIM: 601718

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000028551OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 1998)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Autosomal recessive retinitis pigmentosa and cone-rod dystrophy caused by splice site mutations in the Stargardt's disease gene ABCR.

Cremers FP, van de Pol DJ, van Driel M, den Hollander AI, van Haren FJ, Knoers NV, Tijmes N, Bergen AA, Rohrschneider K, Blankenagel A, Pinckers AJ, Deutman AF, Hoyng CB.

Hum Mol Genet. 1998 Mar;7(3):355-62.

PubMed [citation]
PMID:
9466990

Details of each submission

From OMIM, SCV000028551.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Ophthalmologic and molecular genetic studies were performed by Cremers et al. (1998) in a consanguineous family with individuals showing either retinitis pigmentosa (RP19; 601718) or cone-rod dystrophy (CORD3; 604116). Assuming pseudodominant (recessive) inheritance of allelic defects, linkage analysis positioned the causal gene at 1p21-p13 (lod score = 4.22), a genomic segment that harbors the ABCA4 gene involved in Stargardt disease and age-related macular degeneration. In 4 RP patients in this family they found homozygosity for a 5-prime splice site mutation, IVS30+1G-T. The 5 patients with CORD in this family were compound heterozygotes for the IVS30+1G-T mutation and a 5-prime splice site mutation in intron 40: IVS40+5G-A (601691.0010). Both splice site mutations were found heterozygously in 2 unrelated STGD patients (in whom the second mutation was either a missense mutation or unknown), but not in 100 control individuals. Since no Stargardt patient had been reported to carry 2 ABCR null alleles and the RP phenotype was more severe than the STGD phenotype, Cremers et al. (1998) hypothesized that the intron 30 splice site mutation represented a true null allele. Since the intron 30 mutation was found heterozygously in the CORD patients, the intron 40 mutation probably rendered the exon 40 5-prime splice site partially functional. These results showed that mutations in the ABCR gene result not only in STGD and ARMD, but also in autosomal recessive RP and CORD.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024