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NM_000059.4(BRCA2):c.658_659del (p.Val220fs) AND Wilms tumor 1

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Oct 29, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000009930.14

Allele description [Variation Report for NM_000059.4(BRCA2):c.658_659del (p.Val220fs)]

NM_000059.4(BRCA2):c.658_659del (p.Val220fs)

Gene:
BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
13q13.1
Genomic location:
Preferred name:
NM_000059.4(BRCA2):c.658_659del (p.Val220fs)
Other names:
886_887delGT
HGVS:
  • NC_000013.10:g.32903605_32903606del
  • NC_000013.11:g.32329469_32329470del
  • NG_012772.3:g.18990_18991del
  • NM_000059.4:c.658_659delMANE SELECT
  • NP_000050.3:p.Val220fs
  • LRG_293:g.18990_18991del
  • NC_000013.10:g.32903605_32903606del
  • NC_000013.10:g.32903606_32903607del
  • NC_000013.10:g.32903606_32903607del
  • NC_000013.10:g.32903606_32903607delGT
  • NC_000013.11:g.32329469_32329470delGT
  • NM_000059.3:c.657_658del
  • NM_000059.3:c.658_659delGT
  • U43746.1:n.886_887delGT
  • p.V220IFS*4
  • p.V220IfsX4
  • p.Val220Ilefs*4
  • p.Val220IlefsX4
  • p.Val220fs
Nucleotide change:
886delGT
Links:
Breast Cancer Information Core (BIC) (BRCA2): 886&base_change=del GT; OMIM: 600185.0027; dbSNP: rs80359604
NCBI 1000 Genomes Browser:
rs80359604
Molecular consequence:
  • NM_000059.4:c.658_659del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Wilms tumor 1 (WT1)
Synonyms:
Wilms tumor, somatic
Identifiers:
MONDO: MONDO:0008679; MedGen: CN033288; Orphanet: 654; OMIM: 194070

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000030151OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2007)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV002103006Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Oct 29, 2021)
inheritedclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedinheritedunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Association of biallelic BRCA2/FANCD1 mutations with spontaneous chromosomal instability and solid tumors of childhood.

Hirsch B, Shimamura A, Moreau L, Baldinger S, Hag-alshiekh M, Bostrom B, Sencer S, D'Andrea AD.

Blood. 2004 Apr 1;103(7):2554-9. Epub 2003 Dec 11.

PubMed [citation]
PMID:
14670928

Biallelic BRCA2 mutations are associated with multiple malignancies in childhood including familial Wilms tumour.

Reid S, Renwick A, Seal S, Baskcomb L, Barfoot R, Jayatilake H, Pritchard-Jones K, Stratton MR, Ridolfi-Lüthy A, Rahman N; Breast Cancer Susceptibility Collaboration (UK).; Familial Wilms Tumour Collaboration..

J Med Genet. 2005 Feb;42(2):147-51. No abstract available.

PubMed [citation]
PMID:
15689453
PMCID:
PMC1735989
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000030151.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Fanconi Anemia

In 2 brothers with Fanconi anemia complementation group D1 (FANCD1; 605724), Hirsch et al. (2004) identified compound heterozygosity for mutations in the BRCA2 gene: a 2-bp deletion in exon 8 (886delGT), inherited from the father, and an 8447T-A transversion in exon 18, resulting in a leu2740-to-ter substitution (L2740X; 600185.0028), inherited from the mother.

Wilms Tumor/Medulloblastoma/Glioblastoma

In 2 brothers who developed Wilms tumor (WT1; 194070) and brain tumors, Reid et al. (2005) identified 2 truncating BRCA2 mutations: a paternally inherited 886delGT, predicted to truncate the protein at codon 223 before the 8 BRC repeats, and a maternally inherited 5873C-A transversion in exon 11, resulting in a ser1882-to-ter substitution (S1882X; 600185.0031) predicted to truncate the protein such that BRC7 and BRC8 would be missing. One boy developed a glioblastoma (GLM3; 613029); the other had recurrent medulloblastoma (MDB; 155255) as well as pre-B-cell acute lymphoblastic leukemia. Neither child had the typical clinical features of Fanconi anemia. No first- or second-degree relative had cancer when the family presented; however, after the boys died their mother developed breast cancer at age 45 as did a paternal aunt at age 48.

Alter et al. (2007) included this mutation in an analysis of the clinical and molecular features associated with the BRCA2 mutations identified in FANCD1 patients. They noted that the 886delGT mutation is associated with brain tumors. They also concluded that small group of patients with biallelic mutations in BRCA2 is distinctive in the severity of the phenotype, with early onset and high rates of leukaemia and specific solid tumours. These features may comprise an extreme variant of Fanconi anemia.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn, SCV002103006.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Incidental finding in clinical exome sequencing. PVS1, PS4, PS5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024