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NC_000022.11:g.28800769G>C AND not provided

Germline classification:
risk factor (1 submission)
Last evaluated:
Sep 2, 2004
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000012978.3

Allele description [Variation Report for NC_000022.11:g.28800769G>C]

NC_000022.11:g.28800769G>C

Gene:
XBP1:X-box binding protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q12.1
Genomic location:
Preferred name:
NC_000022.11:g.28800769G>C
HGVS:
  • NC_000022.11:g.28800769G>C
  • NG_012266.1:g.4804C>G
  • NC_000022.10:g.29196757G>C
Nucleotide change:
-116C-G
Links:
OMIM: 194355.0001; dbSNP: rs2269577
NCBI 1000 Genomes Browser:
rs2269577

Condition(s)

Synonyms:
Major affective disorder 7, susceptibility to
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000033223OMIM
no assertion criteria provided
risk factor
(Sep 2, 2004)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Impaired feedback regulation of XBP1 as a genetic risk factor for bipolar disorder.

Kakiuchi C, Iwamoto K, Ishiwata M, Bundo M, Kasahara T, Kusumi I, Tsujita T, Okazaki Y, Nanko S, Kunugi H, Sasaki T, Kato T.

Nat Genet. 2003 Oct;35(2):171-5. Epub 2003 Aug 31.

PubMed [citation]
PMID:
12949534

X-box binding protein 1 (XBP1) C--116G polymorphisms in bipolar disorders and age of onset.

Hou SJ, Yen FC, Cheng CY, Tsai SJ, Hong CJ.

Neurosci Lett. 2004 Sep 2;367(2):232-4.

PubMed [citation]
PMID:
15331160

Details of each submission

From OMIM, SCV000033223.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

Kakiuchi et al. (2003) used DNA microarray analysis of lymphoblastoid cells derived from 2 pairs of Japanese twins discordant for bipolar disorder (612371) to detect causative genes. In a study of 197 unrelated Japanese patients with bipolar disorder and 451 controls, they found an association between a -116C-G polymorphism in the promoter region of XBP1 and susceptibility to bipolar disorder (odds ratio = 4.6). The polymorphism occurs at the putative binding site of XBP1 and presumably interferes with the feedback loop. The concordance rate in monozygotic twins (more than 65%) is much higher than in dizygotic twins (more than 14%). Possible mechanisms of discordance between monozygotic twins include point mutations, extension of triplet repeats, chromosomal aberrations, altered X chromosome inactivation, and aberrant DNA methylation.

In a study of 153 bipolar disorder patients and 174 controls in a Chinese population, Hou et al. (2004) found no significant association between the -116C-G polymorphism and bipolar disorder (p = 0.674 for genotype and p = 0.436 for allele frequency).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024