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NM_000702.4(ATP1A2):c.2192T>C (p.Met731Thr) AND Migraine, familial hemiplegic, 2

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Jun 29, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013782.25

Allele description [Variation Report for NM_000702.4(ATP1A2):c.2192T>C (p.Met731Thr)]

NM_000702.4(ATP1A2):c.2192T>C (p.Met731Thr)

Gene:
ATP1A2:ATPase Na+/K+ transporting subunit alpha 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q23.2
Genomic location:
Preferred name:
NM_000702.4(ATP1A2):c.2192T>C (p.Met731Thr)
HGVS:
  • NC_000001.11:g.160135510T>C
  • NG_008014.1:g.24753T>C
  • NM_000702.4:c.2192T>CMANE SELECT
  • NP_000693.1:p.Met731Thr
  • LRG_6:g.24753T>C
  • NC_000001.10:g.160105300T>C
  • P50993:p.Met731Thr
Protein change:
M731T; MET731THR
Links:
UniProtKB: P50993#VAR_019936; OMIM: 182340.0003; dbSNP: rs28933400
NCBI 1000 Genomes Browser:
rs28933400
Molecular consequence:
  • NM_000702.4:c.2192T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Migraine, familial hemiplegic, 2
Identifiers:
MONDO: MONDO:0011232; MedGen: C1865322; Orphanet: 569; OMIM: 602481

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000034029OMIM
no assertion criteria provided
Pathogenic
(Jan 13, 2012)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV002577607Laboratory of Medical Genetics, National & Kapodistrian University of Athens
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Jun 29, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Novel mutations in the Na+, K+-ATPase pump gene ATP1A2 associated with familial hemiplegic migraine and benign familial infantile convulsions.

Vanmolkot KR, Kors EE, Hottenga JJ, Terwindt GM, Haan J, Hoefnagels WA, Black DF, Sandkuijl LA, Frants RR, Ferrari MD, van den Maagdenberg AM.

Ann Neurol. 2003 Sep;54(3):360-6.

PubMed [citation]
PMID:
12953268

Alterations in the alpha2 isoform of Na,K-ATPase associated with familial hemiplegic migraine type 2.

Segall L, Mezzetti A, Scanzano R, Gargus JJ, Purisima E, Blostein R.

Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):11106-11. Epub 2005 Jul 21.

PubMed [citation]
PMID:
16037212
PMCID:
PMC1178013
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000034029.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In affected members of a family with familial hemiplegic migraine-2 (602481), Vanmolkot et al. (2003) identified a heterozygous 2296T-C transition in exon 16 of the ATP1A2 gene, resulting in a met731-to-thr (M731T) substitution.

Segall et al. (2005) found that the mutant M731T and R689Q (182340.0004) rat Atp1a2 proteins transfected into HeLa cells showed reduced catalytic turnover and increased apparent affinity for extracellular potassium. In addition, M731T showed an increased apparent affinity for ATP. Segall et al. (2005) suggested that the disease phenotype is caused by decreased activity of the Na+/K+ pump, resulting in delayed extracellular potassium clearance and/or altered localized calcium handling or signaling.

Castro et al. (2007) identified the M731T mutation in 3 affected members of a Portuguese family with FHM2. A fourth mutation carrier had only migraine with aura.

Schack et al. (2012) noted that the M731T mutation occurs in the P domain. Expression of the mutation in COS-1 cells showed a severe reduction in the catalytic turnover rate of Na+ and K+, which was due to reduced Vmax of phosphorylation. The mutant showed essentially normal affinity for K+ and Na+. The decreased phosphorylation rate would lead to enhanced K+ competition with Na+ at intracellular sites, which would compromise pump function. The findings suggested that the disturbance of clearance of extracellular K+ by glial cells, thought to underlie FHM2, is due to low turnover rate of the pump and not to decreased affinity of the pump for external K+.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Medical Genetics, National & Kapodistrian University of Athens, SCV002577607.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PM2, PM5, PP3, PP5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2022