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NM_006218.4(PIK3CA):c.3140A>T (p.His1047Leu) AND Breast adenocarcinoma

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 24, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000014629.14

Allele description [Variation Report for NM_006218.4(PIK3CA):c.3140A>T (p.His1047Leu)]

NM_006218.4(PIK3CA):c.3140A>T (p.His1047Leu)

Gene:
PIK3CA:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q26.32
Genomic location:
Preferred name:
NM_006218.4(PIK3CA):c.3140A>T (p.His1047Leu)
HGVS:
  • NC_000003.12:g.179234297A>T
  • NG_012113.2:g.90775A>T
  • NM_006218.4:c.3140A>TMANE SELECT
  • NP_006209.2:p.His1047Leu
  • LRG_310t1:c.3140A>T
  • LRG_310:g.90775A>T
  • NC_000003.11:g.178952085A>T
  • NM_006218.2:c.3140A>T
  • NM_006218.3:c.3140A>T
  • P42336:p.His1047Leu
Protein change:
H1047L; HIS1047LEU
Links:
UniProtKB: P42336#VAR_026191; OMIM: 171834.0002; dbSNP: rs121913279
NCBI 1000 Genomes Browser:
rs121913279
Molecular consequence:
  • NM_006218.4:c.3140A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Breast adenocarcinoma
Synonyms:
Breast cancer, somatic; Breast adenocarcinoma, somatic
Identifiers:
MONDO: MONDO:0004988; MedGen: C0858252

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000034884OMIM
no assertion criteria provided
Pathogenic
(Jun 24, 2012)
somaticliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticnot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutation of the PIK3CA gene in ovarian and breast cancer.

Campbell IG, Russell SE, Choong DY, Montgomery KG, Ciavarella ML, Hooi CS, Cristiano BE, Pearson RB, Phillips WA.

Cancer Res. 2004 Nov 1;64(21):7678-81.

PubMed [citation]
PMID:
15520168

Mosaic overgrowth with fibroadipose hyperplasia is caused by somatic activating mutations in PIK3CA.

Lindhurst MJ, Parker VE, Payne F, Sapp JC, Rudge S, Harris J, Witkowski AM, Zhang Q, Groeneveld MP, Scott CE, Daly A, Huson SM, Tosi LL, Cunningham ML, Darling TN, Geer J, Gucev Z, Sutton VR, Tziotzios C, Dixon AK, Helliwell T, O'Rahilly S, et al.

Nat Genet. 2012 Jun 24;44(8):928-33. doi: 10.1038/ng.2332.

PubMed [citation]
PMID:
22729222
PMCID:
PMC3461408
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000034884.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

Breast Cancer

In 4 breast tumors (114480) from a series of 284 primary human tumors, Campbell et al. (2004) identified a 1340A-T transversion in exon 20 of the PIK3CA gene, resulting in a his1047-to-leu (H1047L) substitution.

CLOVE Syndrome

Lindhurst et al. (2012) performed exome sequencing of DNA from unaffected and affected cells from an individual with an 'unclassified' syndrome of congenital progressive segmental overgrowth of fibrous and adipose tissue and bone and identified the cancer-associated H1047L mutation in the PIK3CA gene in affected cells only, the p110-catalytic subunit of PI3K, only in affected cells, with a mutation burden determined to be from 8% to 39%. The same H1047L alteration was identified in 2 of 9 other individuals with the 'unclassified' syndrome, with mutation burdens ranging from 4% to 49%. The features of the syndrome were consistent with CLOVE syndrome (612918).

CLAPO Syndrome

In tissue from a lymphatic malformation (LM) of the tongue of a 7-year-old female patient (P13) with CLAPO syndrome (613089), Rodriguez-Laguna et al. (2018) identified a c.3140A-T transversion (c.3140A-T, NM_006218.2) in the PIK3CA gene that resulted in a his1047-to-leu (H1047L) mutation in the kinase domain. The mutation was present at an allele frequency of 16% by deep sequencing, was present in 315 samples from the Catalogue of Somatic Mutations in Cancer (COSMIC) database, and had been previously reported in 30 patients with vascular overgrowth disorders. Functional studies were not performed.

Cerebral Cavernous Malformations 4

In samples of cerebral cavernous malformations-4 (CCM4; 619538) from 2 unrelated patients with sporadic occurrence of the disease, Peyre et al. (2021) identified a somatic H1047L mutation in the PIK3CA gene. The mutation was found by targeted DNA sequencing. PIK3CA-mutant CCMs showed increased phosphorylation of myosin light chain and activation of the PI3K-AKT-mTOR pathway, consistent with an activating mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticnot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024