U.S. flag

An official website of the United States government

CYP2D6*4 AND Debrisoquine, poor metabolism of

Germline classification:
drug response (1 submission)
Last evaluated:
May 18, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000018385.31

Allele description [Variation Report for CYP2D6*4]

CYP2D6*4

Gene:
CYP2D6:cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.2
Genomic location:
Preferred name:
CYP2D6*4
Other names:
1846G>A; NM_000106.5(CYP2D6):c.506-1G>A
HGVS:
  • NC_000022.11:g.42128945C>T
  • NG_008376.4:g.6866G>A
  • NM_000106.6:c.506-1G>AMANE SELECT
  • NM_001025161.3:c.353-1G>A
  • LRG_303t1:c.506-1G>A
  • LRG_303:g.6866G>A
  • NC_000022.10:g.42524947C>T
  • NM_000106.5:c.506-1G>A
  • c.1846G>A
Nucleotide change:
IVSDS3, G-A, +1
Links:
Genetic Testing Registry (GTR): GTR000613302; Medical Genetics Summaries: CYP2D6*4; PharmGKB Clinical Annotation: 1183617220; PharmGKB Clinical Annotation: 655384698; OMIM: 124030.0001; dbSNP: rs3892097
NCBI 1000 Genomes Browser:
rs3892097
Molecular consequence:
  • NM_000106.6:c.506-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001025161.3:c.353-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
Functional consequence:
No function

Condition(s)

Name:
Debrisoquine, poor metabolism of
Identifiers:
MedGen: C1837156

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000038667OMIM
no assertion criteria provided
drug response
(May 18, 2015)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Identification of the primary gene defect at the cytochrome P450 CYP2D locus.

Gough AC, Miles JS, Spurr NK, Moss JE, Gaedigk A, Eichelbaum M, Wolf CR.

Nature. 1990 Oct 25;347(6295):773-6.

PubMed [citation]
PMID:
1978251

The human CYP2D locus associated with a common genetic defect in drug oxidation: a G1934----A base change in intron 3 of a mutant CYP2D6 allele results in an aberrant 3' splice recognition site.

Hanioka N, Kimura S, Meyer UA, Gonzalez FJ.

Am J Hum Genet. 1990 Dec;47(6):994-1001.

PubMed [citation]
PMID:
1978565
PMCID:
PMC1683916
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000038667.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

This allelic variant is also known as CYP2D6*4 or CYP2D6(B).

In 20 individuals with poor metabolism of debrisoquine (608902), Gough et al. (1990) identified a G-to-A transition at the first nucleotide of exon 4 in the CYP2D6 gene, resulting in a shift of the splice site and introduction of a premature termination codon. The mutant protein had no residual activity. Gough et al. (1990) presented preliminary data suggesting a reduction in the proportion of poor metabolizers among patients with lung or bladder cancer.

In leukocyte DNA of an individual who was deficient in debrisoquine metabolism, Hanioka et al. (1990) identified a 1934G-A transition at the junction of the third intron and fourth exon, resulting in an aberrant 3-prime splice recognition site and an mRNA with a single basepair deletion. The disrupted mRNA leads to a truncated protein without functional activity. The patient studied was a compound heterozygote: the allele with the 1934G-A mutation was identified by a 44-kb XbaI restriction fragment; the second allele was a complete deletion of the CYP2D6 gene (124030.0002). The dextromethorphan urinary metabolite ratio in this patient was 9.7, which is operationally defined as a poor metabolizer of debrisoquine.

Kagimoto et al. (1990) likewise concluded that the mutation at the 3-prime splice site of intron 3 is a common cause of the poor metabolizer phenotype.

Chen et al. (1995) found that Alzheimer disease (104300) patients who were either heterozygous or homozygous for the CYP2D6*4 allele had a smaller decline of the synaptic markers choline acetyltransferase (118490) and synaptophysin (313475) in the frontal cortex than those who did not. Senile plaques neurofibrillary tangles were not significantly affected. The authors had earlier shown an association of the CYP2D6*4 mutant allele with Lewy body formation (127750). The findings suggested different mechanisms of neurodegeneration in the 2 disorders.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024