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NM_001018005.2(TPM1):c.563+249C>T AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 20, 2010
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000036346.6

Allele description [Variation Report for NM_001018005.2(TPM1):c.563+249C>T]

NM_001018005.2(TPM1):c.563+249C>T

Gene:
TPM1:tropomyosin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q22.2
Genomic location:
Preferred name:
NM_001018005.2(TPM1):c.563+249C>T
HGVS:
  • NC_000015.10:g.63061188C>T
  • NG_007557.1:g.23550C>T
  • NM_000366.6:c.564-10C>T
  • NM_001018004.2:c.563+249C>T
  • NM_001018005.2:c.563+249C>TMANE SELECT
  • NM_001018006.2:c.564-10C>T
  • NM_001018007.2:c.563+249C>T
  • NM_001018008.2:c.455+249C>T
  • NM_001018020.2:c.564-10C>T
  • NM_001301244.2:c.563+249C>T
  • NM_001301289.2:c.455+249C>T
  • NM_001330344.2:c.456-10C>T
  • NM_001330346.2:c.455+249C>T
  • NM_001330351.2:c.456-10C>T
  • NM_001365776.1:c.563+249C>T
  • NM_001365777.1:c.563+249C>T
  • NM_001365778.1:c.689+249C>T
  • NM_001365779.1:c.563+249C>T
  • NM_001365780.1:c.455+249C>T
  • NM_001365781.2:c.456-10C>T
  • NM_001365782.1:c.455+249C>T
  • LRG_387t1:c.563+249C>T
  • LRG_387:g.23550C>T
  • NC_000015.9:g.63353387C>T
  • NM_000366.5:c.564-10C>T
  • c.564-10C>T
Links:
dbSNP: rs397516379
NCBI 1000 Genomes Browser:
rs397516379
Molecular consequence:
  • NM_000366.6:c.564-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018004.2:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018005.2:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018006.2:c.564-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018007.2:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018008.2:c.455+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018020.2:c.564-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301244.2:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301289.2:c.455+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330344.2:c.456-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330346.2:c.455+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330351.2:c.456-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365776.1:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365777.1:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365778.1:c.689+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365779.1:c.563+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365780.1:c.455+249C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365781.2:c.456-10C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365782.1:c.455+249C>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000059998Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)		Uncertain significance
(May 20, 2010) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000059998.7

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Jan 7, 2023