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NM_015404.4(WHRN):c.2283C>T (p.Ser761=) AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Jun 19, 2009
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000038887.5

Allele description [Variation Report for NM_015404.4(WHRN):c.2283C>T (p.Ser761=)]

NM_015404.4(WHRN):c.2283C>T (p.Ser761=)

Gene:
WHRN:whirlin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q32
Genomic location:
Preferred name:
NM_015404.4(WHRN):c.2283C>T (p.Ser761=)
HGVS:
  • NC_000009.12:g.114404031G>A
  • NG_016700.1:g.106426C>T
  • NM_001083885.3:c.1134C>T
  • NM_001173425.2:c.2280C>T
  • NM_001346890.1:c.1230C>T
  • NM_015404.4:c.2283C>TMANE SELECT
  • NP_001077354.2:p.Ser378=
  • NP_001166896.1:p.Ser760=
  • NP_001333819.1:p.Ser410=
  • NP_056219.3:p.Ser761=
  • LRG_1094t1:c.2283C>T
  • LRG_1094:g.106426C>T
  • LRG_1094p1:p.Ser761=
  • NC_000009.11:g.117166311G>A
  • NM_015404.2:c.2283C>T
  • NM_015404.3:c.2283C>T
  • c.2283C>T
  • p.Ser761Ser
Links:
dbSNP: rs34963246
NCBI 1000 Genomes Browser:
rs34963246
Molecular consequence:
  • NM_001083885.3:c.1134C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001173425.2:c.2280C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001346890.1:c.1230C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_015404.4:c.2283C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
383

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000062565Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Jun 19, 2009)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided387383not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000062565.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided387not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided387not provided383not provided

Last Updated: Sep 29, 2024