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NM_170707.4(LMNA):c.244G>A (p.Glu82Lys) AND not provided

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Mar 30, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000057380.1

Allele description [Variation Report for NM_170707.4(LMNA):c.244G>A (p.Glu82Lys)]

NM_170707.4(LMNA):c.244G>A (p.Glu82Lys)

Gene:
LMNA:lamin A/C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q22
Genomic location:
Preferred name:
NM_170707.4(LMNA):c.244G>A (p.Glu82Lys)
HGVS:
  • NC_000001.11:g.156115162G>A
  • NG_008692.2:g.37590G>A
  • NM_001282625.2:c.244G>A
  • NM_001282626.2:c.244G>A
  • NM_005572.4:c.244G>A
  • NM_170707.4:c.244G>AMANE SELECT
  • NM_170708.4:c.244G>A
  • NP_001269554.1:p.Glu82Lys
  • NP_001269555.1:p.Glu82Lys
  • NP_005563.1:p.Glu82Lys
  • NP_733821.1:p.Glu82Lys
  • NP_733822.1:p.Glu82Lys
  • LRG_254t2:c.244G>A
  • LRG_254:g.37590G>A
  • NC_000001.10:g.156084953G>A
  • NM_170707.2:c.244G>A
  • NM_170707.3:c.244G>A
Protein change:
E82K
Links:
dbSNP: rs59270054
NCBI 1000 Genomes Browser:
rs59270054
Molecular consequence:
  • NM_001282625.2:c.244G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282626.2:c.244G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005572.4:c.244G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170707.4:c.244G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170708.4:c.244G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000088493Epithelial Biology; Institute of Medical Biology, Singapore
no classification provided
not providednot providednot provided

SCV000292778GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Mar 30, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providednot providednot providednot providednot providednot provided1not providedliterature only

Details of each submission

From Epithelial Biology; Institute of Medical Biology, Singapore, SCV000088493.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot providednot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

From GeneDx, SCV000292778.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The E82K mutation was reported to segregate with DCM and atrial ventricular block in eight individuals from two Chinese families (Wang et al., 2006; Wu et al., 2010). E82K was not observed in approximately 6500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. In vitro studies showed E82K significantly reduced expression and altered localization of connexin 43 (Sun et al., 2010). Studies in transgenic mice showed E82K activates the FAS and mitochondrial pathways of apoptosis in heart tissue (Lu et al., 2010). E82K is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species. In silico analysis predicts this variant is probably damaging to the protein structure/function. Missense mutations in nearby residues (R72L, R72C, L85R, R89L) have been reported in the Human Gene Mutation Database in association with cardiomyopathy (Stenson et al., 2014), supporting the functional importance of this region of the protein.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 6, 2024