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NC_000005.10:g.162537506_162537507insTGTTTACTAAACAAAAAGAAAGAGC AND Epilepsy, idiopathic generalized, susceptibility to, 13

Germline classification:
risk factor (1 submission)
Last evaluated:
Jul 1, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000115030.3

Allele description [Variation Report for NC_000005.10:g.162537506_162537507insTGTTTACTAAACAAAAAGAAAGAGC]

NC_000005.10:g.162537506_162537507insTGTTTACTAAACAAAAAGAAAGAGC

Gene:
GABRA1:gamma-aminobutyric acid type A receptor subunit alpha1 [Gene - OMIM - HGNC]
Variant type:
Insertion
Cytogenetic location:
5q34
Genomic location:
Preferred name:
NC_000005.10:g.162537506_162537507insTGTTTACTAAACAAAAAGAAAGAGC
HGVS:
  • NC_000005.10:g.162537506_162537507insTGTTTACTAAACAAAAAGAAAGAGC
  • NC_000005.8:g.161897090_161897091insTGTTTACTAAACAAAAAGAAAGAGC
  • NC_000005.9:g.161964512_161964513insTGTTTACTAAACAAAAAGAAAGAGC
Note:
NCBI staff reviewed the sequence information reported in PubMed 21714819 Fig. 2B to determine the location of this allele on the current reference sequence.
Links:
OMIM: 137160.0006; dbSNP: rs587777363
NCBI 1000 Genomes Browser:
rs587777363

Condition(s)

Name:
Epilepsy, idiopathic generalized, susceptibility to, 13
Synonyms:
EPILEPSY, JUVENILE MYOCLONIC, SUSCEPTIBILITY TO, 5; Epilepsy, juvenile myoclonic 5
Identifiers:
MONDO: MONDO:0012627; MedGen: C4013473; Orphanet: 307; Orphanet: 64280; OMIM: 611136

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000148939OMIM
no assertion criteria provided
risk factor
(Jul 1, 2011)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Novel α1 and γ2 GABAA receptor subunit mutations in families with idiopathic generalized epilepsy.

Lachance-Touchette P, Brown P, Meloche C, Kinirons P, Lapointe L, Lacasse H, Lortie A, Carmant L, Bedford F, Bowie D, Cossette P.

Eur J Neurosci. 2011 Jul;34(2):237-49. doi: 10.1111/j.1460-9568.2011.07767.x. Epub 2011 Jun 30.

PubMed [citation]
PMID:
21714819

Details of each submission

From OMIM, SCV000148939.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 3 affected members of a French Canadian family with idiopathic generalized epilepsy-13 (EIG13; 611136), Lachance-Touchette et al. (2011) identified a heterozygous 25-bp insertion close to intron 10 of the GABRA1 gene, resulting in a complex rearrangement of the transcript. RT-PCR analysis of patient cells showed that this insertion resulted in a splicing defect with retention of intron 10, a deletion of the fourth transmembrane domain, and the insertion of 18 amino acids and a premature stop codon (Lys353delins18Ter). An unaffected obligate carrier in the family also carried this mutation, which was not present in 109 healthy controls. In vitro expression studies showed that the mutant protein was retained in the endoplasmic reticulum and did not localize to the plasma membrane. Functional studies showed that the mutant subunit had no current in response to GABA, suggesting a detrimental effect on inhibitory control of neuronal circuits. The patients had late-onset afebrile, generalized tonic-clonic seizures, as well as photosensitivity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022