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NM_000540.3(RYR1):c.130C>T (p.Arg44Cys) AND not provided

Germline classification:
Conflicting interpretations of pathogenicity (4 submissions)
Last evaluated:
Nov 18, 2019
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000119473.23

Allele description [Variation Report for NM_000540.3(RYR1):c.130C>T (p.Arg44Cys)]

NM_000540.3(RYR1):c.130C>T (p.Arg44Cys)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.130C>T (p.Arg44Cys)
Other names:
NM_000540.3(RYR1):c.130C>T
HGVS:
  • NC_000019.10:g.38440829C>T
  • NG_008866.1:g.12130C>T
  • NM_000540.3:c.130C>TMANE SELECT
  • NM_001042723.2:c.130C>T
  • NP_000531.2:p.Arg44Cys
  • NP_000531.2:p.Arg44Cys
  • NP_001036188.1:p.Arg44Cys
  • LRG_766t1:c.130C>T
  • LRG_766:g.12130C>T
  • LRG_766p1:p.Arg44Cys
  • NC_000019.9:g.38931469C>T
  • NM_000540.2:c.130C>T
  • P21817:p.Arg44Cys
  • p.(Arg44Cys)
Protein change:
R44C
Links:
PharmGKB: 1449747643PA164749136; PharmGKB: 1449747643PA449461; PharmGKB: 1449747643PA449845; PharmGKB: 1449747643PA450106; PharmGKB: 1449747643PA450434; PharmGKB: 1449747643PA451341; PharmGKB: 1449747643PA451522; UniProtKB: P21817#VAR_045695; dbSNP: rs193922748
NCBI 1000 Genomes Browser:
rs193922748
Molecular consequence:
  • NM_000540.3:c.130C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.130C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000154380Leiden Muscular Dystrophy (RYR1)
no classification provided
not providedunknownnot provided

PubMed (1)
[See all records that cite this PMID]

SCV000706045Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Uncertain significance
(Feb 8, 2017)
germlineclinical testing

Citation Link,

SCV000852334PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Nov 19, 2013)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002019111Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Nov 18, 2019)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownnot providednot providednot providednot provided1not providedliterature only
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

Scanning for mutations of the ryanodine receptor (RYR1) gene by denaturing HPLC: detection of three novel malignant hyperthermia alleles.

Tammaro A, Bracco A, Cozzolino S, Esposito M, Di Martino A, Savoia G, Zeuli L, Piluso G, Aurino S, Nigro V.

Clin Chem. 2003 May;49(5):761-8.

PubMed [citation]
PMID:
12709367

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Leiden Muscular Dystrophy (RYR1), SCV000154380.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownnot provided1not providednot providednot providednot providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000706045.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From PreventionGenetics, part of Exact Sciences, SCV000852334.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV002019111.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024