GRCh38/hg38 1q25.2-25.3(chr1:180210306-180309409)x3 AND See cases

Germline classification:: Likely benign (1 submission)
Last evaluated:: Dec 22, 2010
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000134930.6

Allele description [Variation Report for GRCh38/hg38 1q25.2-25.3(chr1:180210306-180309409)x3]

GRCh38/hg38 1q25.2-25.3(chr1:180210306-180309409)x3

Genes:

LOC129932008:ATAC-STARR-seq lymphoblastoid silent region 1593 [Gene]
LHX4-AS1:LHX4 antisense RNA 1 [Gene - HGNC]
LHX4:LIM homeobox 4 [Gene - OMIM - HGNC]
LOC121725065:Sharpr-MPRA regulatory region 8966 [Gene]
ACBD6:acyl-CoA binding domain containing 6 [Gene - OMIM - HGNC]

Variant type:

copy number gain

Cytogenetic location:

1q25.2-25.3

Genomic location:

Preferred name:

GRCh38/hg38 1q25.2-25.3(chr1:180210306-180309409)x3

HGVS:

NC_000001.11:g.(?_180210306)_(180309409_?)dup
NC_000001.10:g.(?_180179441)_(180278544_?)dup
NC_000001.9:g.(?_178446064)_(178545167_?)dup

Links:

dbVar: nssv584462; dbVar: nsv498075

Observations:

Condition(s)

Name:: See cases [See the Variation display for details]
Identifiers:

Recent activity

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G protein-coupled receptor kinase 6 isoform a [Rattus norvegicus]
G protein-coupled receptor kinase 6 isoform a [Rattus norvegicus]
gi|78214361|ref|NP_113845.2|

Protein
Adgra2 adhesion G protein-coupled receptor A2 [Rattus norvegicus]
Adgra2 adhesion G protein-coupled receptor A2 [Rattus norvegicus]
Gene ID:100363275

Gene
Rab24 RAB24, member RAS oncogene family [Rattus norvegicus]
Rab24 RAB24, member RAS oncogene family [Rattus norvegicus]
Gene ID:361208

Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000174586	ISCA site 1 See additional submitters International Standards For Cytogenomic Arrays Consortium (ISCA)	no assertion criteria provided	Likely benign (Dec 22, 2010)	paternal	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000174586

ISCA site 1

See additional submitters

no assertion criteria provided

Likely benign
(Dec 22, 2010)

paternal

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	paternal	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]

PMID:: 20466091
PMCID:: PMC2869000

Details of each submission

From ISCA site 1, SCV000174586.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	paternal	yes	not provided	not provided	Discovery		1	not provided	not provided	not provided

Last Updated: May 7, 2024

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