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GRCh38/hg38 2q11.2(chr2:100404604-100908738)x3 AND See cases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 24, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000139353.6

Allele description [Variation Report for GRCh38/hg38 2q11.2(chr2:100404604-100908738)x3]

GRCh38/hg38 2q11.2(chr2:100404604-100908738)x3

Genes:
  • LOC129934448:ATAC-STARR-seq lymphoblastoid silent region 11814 [Gene]
  • LOC129934449:ATAC-STARR-seq lymphoblastoid silent region 11815 [Gene]
  • LOC129934450:ATAC-STARR-seq lymphoblastoid silent region 11816 [Gene]
  • LOC126806284:MED14-independent group 3 enhancer GRCh37_chr2:101518843-101520042 [Gene]
  • LOC122817716:Sharpr-MPRA regulatory region 3478 [Gene]
  • CHST10:carbohydrate sulfotransferase 10 [Gene - OMIM - HGNC]
  • LINC01849:long intergenic non-protein coding RNA 1849 [Gene - HGNC]
  • NMS:neuromedin S [Gene - OMIM - HGNC]
  • NPAS2:neuronal PAS domain protein 2 [Gene - OMIM - HGNC]
  • PDCL3:phosducin like 3 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2q11.2
Genomic location:
Preferred name:
GRCh38/hg38 2q11.2(chr2:100404604-100908738)x3
HGVS:
  • NC_000002.12:g.(?_100404604)_(100908738_?)dup
  • NC_000002.10:g.(?_100387498)_(100891632_?)dup
  • NC_000002.11:g.(?_101021066)_(101525200_?)dup
Links:
dbVar: nssv1604380; dbVar: nsv916792
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000179891ISCA site 1

See additional submitters

no assertion criteria provided
Likely benign
(Oct 24, 2012) 		maternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 1, SCV000179891.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024