U.S. flag

An official website of the United States government

GRCh38/hg38 9p24.3-24.1(chr9:211086-7444397)x1 AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 30, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000140601.6

Allele description [Variation Report for GRCh38/hg38 9p24.3-24.1(chr9:211086-7444397)x1]

GRCh38/hg38 9p24.3-24.1(chr9:211086-7444397)x1

Genes:
  • LOC130001439:ATAC-STARR-seq lymphoblastoid active region 28115 [Gene]
  • LOC130001440:ATAC-STARR-seq lymphoblastoid active region 28116 [Gene]
  • LOC130001441:ATAC-STARR-seq lymphoblastoid active region 28117 [Gene]
  • LOC130001442:ATAC-STARR-seq lymphoblastoid active region 28118 [Gene]
  • LOC130001444:ATAC-STARR-seq lymphoblastoid active region 28120 [Gene]
  • LOC130001446:ATAC-STARR-seq lymphoblastoid active region 28121 [Gene]
  • LOC130001448:ATAC-STARR-seq lymphoblastoid active region 28122 [Gene]
  • LOC130001449:ATAC-STARR-seq lymphoblastoid active region 28123 [Gene]
  • LOC130001450:ATAC-STARR-seq lymphoblastoid active region 28124 [Gene]
  • LOC130001451:ATAC-STARR-seq lymphoblastoid active region 28125 [Gene]
  • LOC130001452:ATAC-STARR-seq lymphoblastoid active region 28126 [Gene]
  • LOC130001453:ATAC-STARR-seq lymphoblastoid active region 28127 [Gene]
  • LOC130001454:ATAC-STARR-seq lymphoblastoid active region 28128 [Gene]
  • LOC130001455:ATAC-STARR-seq lymphoblastoid active region 28129 [Gene]
  • LOC130001456:ATAC-STARR-seq lymphoblastoid active region 28130 [Gene]
  • LOC130001457:ATAC-STARR-seq lymphoblastoid active region 28131 [Gene]
  • LOC130001458:ATAC-STARR-seq lymphoblastoid active region 28132 [Gene]
  • LOC130001459:ATAC-STARR-seq lymphoblastoid active region 28133 [Gene]
  • LOC130001460:ATAC-STARR-seq lymphoblastoid active region 28134 [Gene]
  • LOC130001465:ATAC-STARR-seq lymphoblastoid active region 28135 [Gene]
  • LOC130001466:ATAC-STARR-seq lymphoblastoid active region 28136 [Gene]
  • LOC130001467:ATAC-STARR-seq lymphoblastoid active region 28137 [Gene]
  • LOC130001473:ATAC-STARR-seq lymphoblastoid active region 28139 [Gene]
  • LOC130001475:ATAC-STARR-seq lymphoblastoid active region 28141 [Gene]
  • LOC130001476:ATAC-STARR-seq lymphoblastoid active region 28142 [Gene]
  • LOC130001477:ATAC-STARR-seq lymphoblastoid active region 28143 [Gene]
  • LOC130001478:ATAC-STARR-seq lymphoblastoid active region 28144 [Gene]
  • LOC130001479:ATAC-STARR-seq lymphoblastoid active region 28145 [Gene]
  • LOC130001481:ATAC-STARR-seq lymphoblastoid active region 28146 [Gene]
  • LOC130001483:ATAC-STARR-seq lymphoblastoid active region 28147 [Gene]
  • LOC130001487:ATAC-STARR-seq lymphoblastoid active region 28148 [Gene]
  • LOC130001490:ATAC-STARR-seq lymphoblastoid active region 28149 [Gene]
  • LOC130001492:ATAC-STARR-seq lymphoblastoid active region 28150 [Gene]
  • LOC130001493:ATAC-STARR-seq lymphoblastoid active region 28152 [Gene]
  • LOC130001494:ATAC-STARR-seq lymphoblastoid active region 28153 [Gene]
  • LOC130001495:ATAC-STARR-seq lymphoblastoid active region 28154 [Gene]
  • LOC130001498:ATAC-STARR-seq lymphoblastoid active region 28156 [Gene]
  • LOC130001499:ATAC-STARR-seq lymphoblastoid active region 28157 [Gene]
  • LOC130001500:ATAC-STARR-seq lymphoblastoid active region 28159 [Gene]
  • LOC130001501:ATAC-STARR-seq lymphoblastoid active region 28160 [Gene]
  • LOC130001502:ATAC-STARR-seq lymphoblastoid active region 28161 [Gene]
  • LOC130001503:ATAC-STARR-seq lymphoblastoid active region 28163 [Gene]
  • LOC130001504:ATAC-STARR-seq lymphoblastoid active region 28164 [Gene]
  • LOC130001505:ATAC-STARR-seq lymphoblastoid active region 28165 [Gene]
  • LOC130001506:ATAC-STARR-seq lymphoblastoid active region 28167 [Gene]
  • LOC130001507:ATAC-STARR-seq lymphoblastoid active region 28168 [Gene]
  • LOC130001508:ATAC-STARR-seq lymphoblastoid active region 28169 [Gene]
  • LOC130001509:ATAC-STARR-seq lymphoblastoid active region 28170 [Gene]
  • LOC130001511:ATAC-STARR-seq lymphoblastoid active region 28171 [Gene]
  • LOC130001512:ATAC-STARR-seq lymphoblastoid active region 28172 [Gene]
  • LOC130001513:ATAC-STARR-seq lymphoblastoid active region 28173 [Gene]
  • LOC130001514:ATAC-STARR-seq lymphoblastoid active region 28174 [Gene]
  • LOC130001515:ATAC-STARR-seq lymphoblastoid active region 28175 [Gene]
  • LOC130001517:ATAC-STARR-seq lymphoblastoid active region 28176 [Gene]
  • LOC130001520:ATAC-STARR-seq lymphoblastoid active region 28177 [Gene]
  • LOC130001521:ATAC-STARR-seq lymphoblastoid active region 28178 [Gene]
  • LOC130001522:ATAC-STARR-seq lymphoblastoid active region 28179 [Gene]
  • LOC130001525:ATAC-STARR-seq lymphoblastoid active region 28180 [Gene]
  • LOC130001527:ATAC-STARR-seq lymphoblastoid active region 28181 [Gene]
  • LOC130001529:ATAC-STARR-seq lymphoblastoid active region 28182 [Gene]
  • LOC130001530:ATAC-STARR-seq lymphoblastoid active region 28183 [Gene]
  • LOC130001531:ATAC-STARR-seq lymphoblastoid active region 28185 [Gene]
  • LOC130001536:ATAC-STARR-seq lymphoblastoid active region 28186 [Gene]
  • LOC130001537:ATAC-STARR-seq lymphoblastoid active region 28187 [Gene]
  • LOC130001538:ATAC-STARR-seq lymphoblastoid active region 28191 [Gene]
  • LOC130001540:ATAC-STARR-seq lymphoblastoid active region 28192 [Gene]
  • LOC130001541:ATAC-STARR-seq lymphoblastoid active region 28193 [Gene]
  • LOC130001542:ATAC-STARR-seq lymphoblastoid active region 28198 [Gene]
  • LOC130001543:ATAC-STARR-seq lymphoblastoid active region 28199 [Gene]
  • LOC130001544:ATAC-STARR-seq lymphoblastoid active region 28200 [Gene]
  • LOC130001545:ATAC-STARR-seq lymphoblastoid active region 28201 [Gene]
  • LOC130001546:ATAC-STARR-seq lymphoblastoid active region 28202 [Gene]
  • LOC130001547:ATAC-STARR-seq lymphoblastoid active region 28203 [Gene]
  • LOC130001548:ATAC-STARR-seq lymphoblastoid active region 28204 [Gene]
  • LOC130001549:ATAC-STARR-seq lymphoblastoid active region 28205 [Gene]
  • LOC130001550:ATAC-STARR-seq lymphoblastoid active region 28206 [Gene]
  • LOC130001553:ATAC-STARR-seq lymphoblastoid active region 28207 [Gene]
  • LOC130001554:ATAC-STARR-seq lymphoblastoid active region 28209 [Gene]
  • LOC130001556:ATAC-STARR-seq lymphoblastoid active region 28210 [Gene]
  • LOC130001435:ATAC-STARR-seq lymphoblastoid silent region 19720 [Gene]
  • LOC130001436:ATAC-STARR-seq lymphoblastoid silent region 19721 [Gene]
  • LOC130001437:ATAC-STARR-seq lymphoblastoid silent region 19722 [Gene]
  • LOC130001438:ATAC-STARR-seq lymphoblastoid silent region 19723 [Gene]
  • LOC130001443:ATAC-STARR-seq lymphoblastoid silent region 19725 [Gene]
  • LOC130001445:ATAC-STARR-seq lymphoblastoid silent region 19726 [Gene]
  • LOC130001447:ATAC-STARR-seq lymphoblastoid silent region 19727 [Gene]
  • LOC130001461:ATAC-STARR-seq lymphoblastoid silent region 19728 [Gene]
  • LOC130001462:ATAC-STARR-seq lymphoblastoid silent region 19729 [Gene]
  • LOC130001463:ATAC-STARR-seq lymphoblastoid silent region 19730 [Gene]
  • LOC130001464:ATAC-STARR-seq lymphoblastoid silent region 19731 [Gene]
  • LOC130001468:ATAC-STARR-seq lymphoblastoid silent region 19733 [Gene]
  • LOC130001469:ATAC-STARR-seq lymphoblastoid silent region 19734 [Gene]
  • LOC130001470:ATAC-STARR-seq lymphoblastoid silent region 19735 [Gene]
  • LOC130001471:ATAC-STARR-seq lymphoblastoid silent region 19736 [Gene]
  • LOC130001472:ATAC-STARR-seq lymphoblastoid silent region 19737 [Gene]
  • LOC130001474:ATAC-STARR-seq lymphoblastoid silent region 19740 [Gene]
  • LOC130001480:ATAC-STARR-seq lymphoblastoid silent region 19741 [Gene]
  • LOC130001482:ATAC-STARR-seq lymphoblastoid silent region 19742 [Gene]
  • LOC130001484:ATAC-STARR-seq lymphoblastoid silent region 19743 [Gene]
  • LOC130001485:ATAC-STARR-seq lymphoblastoid silent region 19744 [Gene]
  • LOC130001486:ATAC-STARR-seq lymphoblastoid silent region 19745 [Gene]
  • LOC130001488:ATAC-STARR-seq lymphoblastoid silent region 19746 [Gene]
  • LOC130001489:ATAC-STARR-seq lymphoblastoid silent region 19747 [Gene]
  • LOC130001491:ATAC-STARR-seq lymphoblastoid silent region 19748 [Gene]
  • LOC130001496:ATAC-STARR-seq lymphoblastoid silent region 19749 [Gene]
  • LOC130001497:ATAC-STARR-seq lymphoblastoid silent region 19752 [Gene]
  • LOC130001510:ATAC-STARR-seq lymphoblastoid silent region 19753 [Gene]
  • LOC130001516:ATAC-STARR-seq lymphoblastoid silent region 19754 [Gene]
  • LOC130001518:ATAC-STARR-seq lymphoblastoid silent region 19755 [Gene]
  • LOC130001519:ATAC-STARR-seq lymphoblastoid silent region 19756 [Gene]
  • LOC130001523:ATAC-STARR-seq lymphoblastoid silent region 19757 [Gene]
  • LOC130001524:ATAC-STARR-seq lymphoblastoid silent region 19758 [Gene]
  • LOC130001526:ATAC-STARR-seq lymphoblastoid silent region 19759 [Gene]
  • LOC130001528:ATAC-STARR-seq lymphoblastoid silent region 19762 [Gene]
  • LOC130001532:ATAC-STARR-seq lymphoblastoid silent region 19763 [Gene]
  • LOC130001533:ATAC-STARR-seq lymphoblastoid silent region 19764 [Gene]
  • LOC130001534:ATAC-STARR-seq lymphoblastoid silent region 19765 [Gene]
  • LOC130001535:ATAC-STARR-seq lymphoblastoid silent region 19766 [Gene]
  • LOC130001539:ATAC-STARR-seq lymphoblastoid silent region 19769 [Gene]
  • LOC130001551:ATAC-STARR-seq lymphoblastoid silent region 19770 [Gene]
  • LOC130001552:ATAC-STARR-seq lymphoblastoid silent region 19771 [Gene]
  • LOC130001555:ATAC-STARR-seq lymphoblastoid silent region 19772 [Gene]
  • LOC126860552:BRD4-independent group 4 enhancer GRCh37_chr9:285795-286994 [Gene]
  • LOC126860553:BRD4-independent group 4 enhancer GRCh37_chr9:621337-622536 [Gene]
  • CD274:CD274 molecule [Gene - OMIM - HGNC]
  • CDC37L1-DT:CDC37L1 divergent transcript [Gene - HGNC]
  • LOC126860555:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:1928727-1929926 [Gene]
  • LOC126860559:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:3674142-3675341 [Gene]
  • LOC126860560:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:3862633-3863832 [Gene]
  • LOC126860561:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:3927295-3928494 [Gene]
  • LOC126860564:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:4329035-4330234 [Gene]
  • LOC126860567:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:5509079-5510278 [Gene]
  • LOC126860568:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:5762408-5763607 [Gene]
  • LOC126860570:CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:6084860-6086059 [Gene]
  • DOCK8-AS1:DOCK8 antisense RNA 1 [Gene - HGNC]
  • GLIS3:GLIS family zinc finger 3 [Gene - OMIM - HGNC]
  • GLIS3-AS1:GLIS3 antisense RNA 1 [Gene - HGNC]
  • GLIS3-AS2:GLIS3 antisense RNA 2 [Gene - HGNC]
  • LOC108281132:GLIS3 intron CAGE-defined low expression enhancer [Gene]
  • LOC111413010:HNF4 motif-containing MPRA enhancer 135 [Gene]
  • LOC107882132:INSL4 promoter region [Gene]
  • JAK2:Janus kinase 2 [Gene - OMIM - HGNC]
  • KANK1:KN motif and ankyrin repeat domains 1 [Gene - OMIM - HGNC]
  • LOC126860557:MED14-independent group 3 enhancer GRCh37_chr9:2361801-2363000 [Gene]
  • LOC126860558:MED14-independent group 3 enhancer GRCh37_chr9:3478271-3479470 [Gene]
  • LOC126860562:MED14-independent group 3 enhancer GRCh37_chr9:3968328-3969527 [Gene]
  • LOC126860565:MED14-independent group 3 enhancer GRCh37_chr9:4605494-4606693 [Gene]
  • LOC126860569:MED14-independent group 3 enhancer GRCh37_chr9:5909826-5911025 [Gene]
  • LOC126860571:MED14-independent group 3 enhancer GRCh37_chr9:6086910-6088109 [Gene]
  • LOC126860554:MED14-independent group 3 enhancer GRCh37_chr9:737889-739088 [Gene]
  • LOC126860575:MED14-independent group 3 enhancer GRCh37_chr9:7433352-7434551 [Gene]
  • LOC129390062:MPRA-validated peak7200 silencer [Gene]
  • LOC126860556:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:2260567-2261766 [Gene]
  • LOC126860563:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:4136663-4137862 [Gene]
  • LOC126860566:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:5437227-5438426 [Gene]
  • LOC126860572:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:6152686-6153885 [Gene]
  • LOC126860573:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:6566198-6567397 [Gene]
  • LOC126860574:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:7319761-7320960 [Gene]
  • RANBP6:RAN binding protein 6 [Gene - HGNC]
  • RFX3-DT:RFX3 divergent transcript [Gene - HGNC]
  • RIC1:RIC1 homolog, RAB6A GEF complex partner 1 [Gene - OMIM - HGNC]
  • RCL1:RNA terminal phosphate cyclase like 1 [Gene - OMIM - HGNC]
  • SMARCA2:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Gene - OMIM - HGNC]
  • LOC124210611:Sharpr-MPRA regulatory region 10284 [Gene]
  • LOC113839554:Sharpr-MPRA regulatory region 10661 [Gene]
  • LOC121740739:Sharpr-MPRA regulatory region 12609 [Gene]
  • LOC121331316:Sharpr-MPRA regulatory region 13837 [Gene]
  • LOC124210610:Sharpr-MPRA regulatory region 14111 [Gene]
  • LOC114022704:Sharpr-MPRA regulatory region 14989 [Gene]
  • LOC124210605:Sharpr-MPRA regulatory region 15053 [Gene]
  • LOC111465019:Sharpr-MPRA regulatory region 2314 [Gene]
  • LOC113839544:Sharpr-MPRA regulatory region 29 [Gene]
  • LOC121740737:Sharpr-MPRA regulatory region 3102 [Gene]
  • LOC121331317:Sharpr-MPRA regulatory region 3194 [Gene]
  • LOC121331318:Sharpr-MPRA regulatory region 3538 [Gene]
  • LOC121331319:Sharpr-MPRA regulatory region 4294 [Gene]
  • LOC124210607:Sharpr-MPRA regulatory region 5035 [Gene]
  • LOC124210609:Sharpr-MPRA regulatory region 5337 [Gene]
  • LOC121740738:Sharpr-MPRA regulatory region 6053 [Gene]
  • LOC124210612:Sharpr-MPRA regulatory region 6415 [Gene]
  • LOC124210606:Sharpr-MPRA regulatory region 8982 [Gene]
  • LOC121811698:Sharpr-MPRA regulatory region 9164 [Gene]
  • LOC124210608:Sharpr-MPRA regulatory region 9529 [Gene]
  • TPD52L3:TPD52 like 3 [Gene - OMIM - HGNC]
  • LOC110120591:VISTA enhancer hs112 [Gene]
  • LOC110121072:VISTA enhancer hs1350 [Gene]
  • LOC110121197:VISTA enhancer hs1743 [Gene]
  • VLDLR-AS1:VLDLR antisense RNA 1 [Gene - HGNC]
  • AK3:adenylate kinase 3 [Gene - OMIM - HGNC]
  • BRD10:bromodomain containing 10 [Gene - HGNC]
  • CDC37L1:cell division cycle 37 like 1, HSP90 cochaperone [Gene - OMIM - HGNC]
  • DOCK8:dedicator of cytokinesis 8 [Gene - OMIM - HGNC]
  • DMRT1:doublesex and mab-3 related transcription factor 1 [Gene - OMIM - HGNC]
  • DMRT2:doublesex and mab-3 related transcription factor 2 [Gene - OMIM - HGNC]
  • DMRT3:doublesex and mab-3 related transcription factor 3 [Gene - OMIM - HGNC]
  • ERMP1:endoplasmic reticulum metallopeptidase 1 [Gene - OMIM - HGNC]
  • GLDC:glycine decarboxylase [Gene - OMIM - HGNC]
  • INSL4:insulin like 4 [Gene - OMIM - HGNC]
  • INSL6:insulin like 6 [Gene - OMIM - HGNC]
  • IL33:interleukin 33 [Gene - OMIM - HGNC]
  • LINC01230:long intergenic non-protein coding RNA 1230 [Gene - HGNC]
  • LINC01231:long intergenic non-protein coding RNA 1231 [Gene - HGNC]
  • LINC02851:long intergenic non-protein coding RNA 2851 [Gene - HGNC]
  • KDM4C:lysine demethylase 4C [Gene - OMIM - HGNC]
  • MLANA:melan-A [Gene - OMIM - HGNC]
  • MIR101-2:microRNA 101-2 [Gene - OMIM - HGNC]
  • MIR4665:microRNA 4665 [Gene - HGNC]
  • PLPP6:phospholipid phosphatase 6 [Gene - OMIM - HGNC]
  • PLGRKT:plasminogen receptor with a C-terminal lysine [Gene - OMIM - HGNC]
  • KCNV2:potassium voltage-gated channel modifier subfamily V member 2 [Gene - OMIM - HGNC]
  • PDCD1LG2:programmed cell death 1 ligand 2 [Gene - OMIM - HGNC]
  • PUM3:pumilio RNA binding family member 3 [Gene - OMIM - HGNC]
  • RFX3:regulatory factor X3 [Gene - OMIM - HGNC]
  • RLN1:relaxin 1 [Gene - OMIM - HGNC]
  • RLN2:relaxin 2 [Gene - OMIM - HGNC]
  • SLC1A1:solute carrier family 1 member 1 [Gene - OMIM - HGNC]
  • SPATA6L:spermatogenesis associated 6 like [Gene - HGNC]
  • UHRF2:ubiquitin like with PHD and ring finger domains 2 [Gene - OMIM - HGNC]
  • VLDLR:very low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
9p24.3-24.1
Genomic location:
Preferred name:
GRCh38/hg38 9p24.3-24.1(chr9:211086-7444397)x1
HGVS:
  • NC_000009.12:g.(?_211086)_(7444397_?)del
  • NC_000009.10:g.(?_201086)_(7434397_?)del
  • NC_000009.11:g.(?_211086)_(7444397_?)del
Links:
dbVar: nssv1609949; dbVar: nsv931808
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000181307ISCA Site 6

See additional submitters

no assertion criteria provided
Pathogenic
(Apr 30, 2011) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA Site 6, SCV000181307.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Sep 1, 2024