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NM_017617.5(NOTCH1):c.4487G>A (p.Cys1496Tyr) AND Adams-Oliver syndrome 5

Germline classification:
Pathogenic (2 submissions)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000144236.7

Allele description [Variation Report for NM_017617.5(NOTCH1):c.4487G>A (p.Cys1496Tyr)]

NM_017617.5(NOTCH1):c.4487G>A (p.Cys1496Tyr)

Gene:
NOTCH1:notch receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.3
Genomic location:
Preferred name:
NM_017617.5(NOTCH1):c.4487G>A (p.Cys1496Tyr)
HGVS:
  • NC_000009.12:g.136505409C>T
  • NG_007458.1:g.45378G>A
  • NM_017617.5:c.4487G>AMANE SELECT
  • NP_060087.3:p.Cys1496Tyr
  • LRG_1122t1:c.4487G>A
  • LRG_1122:g.45378G>A
  • LRG_1122p1:p.Cys1496Tyr
  • NC_000009.11:g.139399861C>T
  • NM_017617.3:c.4487G>A
  • P46531:p.Cys1496Tyr
Protein change:
C1496Y; CYS1496TYR
Links:
UniProtKB: P46531#VAR_071961; OMIM: 190198.0006; dbSNP: rs587781259
NCBI 1000 Genomes Browser:
rs587781259
Molecular consequence:
  • NM_017617.5:c.4487G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Adams-Oliver syndrome 5 (AOS5)
Identifiers:
MONDO: MONDO:0014459; MedGen: C4014970; Orphanet: 974; OMIM: 616028

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000172281ITMI
criteria provided, single submitter

(Submitter's publication)
Pathogenicde novoresearch

PubMed (1)
[See all records that cite this PMID]

SCV000189370OMIM
no assertion criteria provided
Pathogenic
(Sep 4, 2014)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedresearch
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in NOTCH1 cause Adams-Oliver syndrome.

Stittrich AB, Lehman A, Bodian DL, Ashworth J, Zong Z, Li H, Lam P, Khromykh A, Iyer RK, Vockley JG, Baveja R, Silva ES, Dixon J, Leon EL, Solomon BD, Glusman G, Niederhuber JE, Roach JC, Patel MS.

Am J Hum Genet. 2014 Sep 4;95(3):275-84. doi: 10.1016/j.ajhg.2014.07.011. Epub 2014 Aug 14.

PubMed [citation]
PMID:
25132448
PMCID:
PMC4157158

Details of each submission

From ITMI, SCV000172281.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

From OMIM, SCV000189370.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a female proband of European and Asian ancestry with Adams-Oliver syndrome-5 (AOS5; 616028), Stittrich et al. (2014) identified heterozygosity for a de novo c.4487G-A transition (chr9:139,399,861; GRCh37) in the NOTCH1 gene, resulting in a cys1496-to-tyr (C1496Y) substitution at a highly conserved residue within the extracellular negative regulatory region (NRR) of the second Lin-12 NOTCH repeat (LNR) domain. Stittrich et al. (2014) noted that the NRR sterically inhibits processing of NOTCH1 in the absence of ligand stimulation; thus, destabilization of this domain could increase constitutive Notch signaling and result in a gain of function. The mutation was not found in the proband's unaffected parents or in more than 10,000 control genomes or exomes. The patient was born with severe aplasia cutis affecting most of the scalp superior to the ears as well as the posterior neck. She had bilateral prominent tortuous scalp vessels, truncal cutis marmorata, and bilateral toe hypoplasia with absent toenails. Neuroimaging at day 1 of life showed small focal areas of bilateral parietal and left frontal white matter acute infarction and partial superior sagittal sinus thrombosis; repeat imaging at 1 week showed evolving biparietal and left frontal lobe infarcts, near-complete sagittal sinus thrombosis, and biparietal cortical venous thromboses, with stabilization and improvement over the next several months. She also had mild mitral valve annulus hypoplasia and multiperforated patent foramen ovale with insignificant shunting; severe pulmonary hypertension on day 1 of life resolved by day 10.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022