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NM_144672.4(OTOA):c.1172C>T (p.Ser391Leu) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 22, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000155779.4

Allele description [Variation Report for NM_144672.4(OTOA):c.1172C>T (p.Ser391Leu)]

NM_144672.4(OTOA):c.1172C>T (p.Ser391Leu)

Gene:
OTOA:otoancorin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p12.2
Genomic location:
Preferred name:
NM_144672.4(OTOA):c.1172C>T (p.Ser391Leu)
HGVS:
  • NC_000016.10:g.21709955C>T
  • NG_012973.2:g.50823C>T
  • NM_001161683.2:c.935C>T
  • NM_144672.4:c.1172C>TMANE SELECT
  • NM_170664.3:c.200C>T
  • NP_001155155.1:p.Ser312Leu
  • NP_653273.3:p.Ser391Leu
  • NP_733764.1:p.Ser67Leu
  • NC_000016.9:g.21721276C>T
  • NG_012973.1:g.36442C>T
  • NM_144672.3:c.1172C>T
Protein change:
S312L
Links:
dbSNP: rs727504599
NCBI 1000 Genomes Browser:
rs727504599
Molecular consequence:
  • NM_001161683.2:c.935C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_144672.4:c.1172C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170664.3:c.200C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000205490Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Uncertain significance
(May 22, 2013)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000205490.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The Ser391Leu variant in the OTOA gene has not been reported in individuals with hearing loss or in large population studies. Computational analyses (biochemica l amino acid properties, conservation, AlignGVGD, PolyPhen2, and SIFT) suggest t hat the Ser391Leu variant may impact the protein, though this information is not predictive enough to determine pathogenicity. In summary, additional informatio n is needed to fully assess the clinical significance of the Ser391Leu variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Mar 16, 2024