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NM_000258.3(MYL3):c.445A>G (p.Met149Val) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 31, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000158948.4

Allele description [Variation Report for NM_000258.3(MYL3):c.445A>G (p.Met149Val)]

NM_000258.3(MYL3):c.445A>G (p.Met149Val)

Gene:
MYL3:myosin light chain 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p21.31
Genomic location:
Preferred name:
NM_000258.3(MYL3):c.445A>G (p.Met149Val)
Other names:
p.M149V:ATG>GTG
HGVS:
  • NC_000003.12:g.46859511T>C
  • NG_007555.2:g.27659A>G
  • NM_000258.3:c.445A>GMANE SELECT
  • NP_000249.1:p.Met149Val
  • NP_000249.1:p.Met149Val
  • LRG_395t1:c.445A>G
  • LRG_395:g.27659A>G
  • LRG_395p1:p.Met149Val
  • NC_000003.11:g.46901001T>C
  • NM_000258.2:c.445A>G
  • P08590:p.Met149Val
  • p.(Met149Val)
Protein change:
M149V; MET149VAL
Links:
Leiden Muscular Dystrophy (MYL3): MYL3_00002; UniProtKB: P08590#VAR_004599; OMIM: 160790.0001; dbSNP: rs104893748
NCBI 1000 Genomes Browser:
rs104893748
Molecular consequence:
  • NM_000258.3:c.445A>G - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
functional variant [Sequence Ontology: SO:0001536]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000208883GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Pathogenic
(Aug 31, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000208883.13

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The Met149Val mutation in the MYL3 gene has been published in association with HCM (Poetter K et al., 1996; Arad M et al., 2005). Poetter et al. reported Met149Val to co-segregate with HCM in one family, and did not detect the mutation in 378 control chromosomes from healthy individuals. Six of the 13 family members with HCM had a phenotype involving mid left ventricular chamber (MVC) thickening apparent in a left ventriculogram (Poetter K et al., 1996). Additionally, this study performed in vitro motility assays and demonstrated that myosin from patients with the Met149Val mutation translocated actin filaments somewhat faster than the control myosin. Arad et al. reported the Met149Val mutation in a 23 year old individual with HCM, who presented with palpitations. Previous clinical evaluations in this individual's relatives identified apical HCM in 5 individuals, and typical asymmetrical hypertrophy of the anterior basal septum in 6 individuals. Two other individuals in the family were reported to have heart failure, and 3 others had sudden death. Although Met149Val results in a conservative amino acid replacement of one non-polar residue for another, the Met149 residue is highly conserved across species. Mutations affecting nearby codons (Glu143Lys, Gly152Lys, Arg154His) have been reported in association with HCM, further supporting the functional importance of this region of the protein. In silico analysis predicts this change to be probably damaging to the structure/function of the protein. Furthermore, Met149Val was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. Of note, studies performed on transgenic rabbits harboring the Met149Val mutation in the MYL3 gene failed to recapitulate an HCM phenotype (James J et al., 2002). However, the authors acknowledged the association of Met149Val with HCM in humans and noted that the conflicting data may be due to the young age of the animals used. In summary, Met149Val in the MYL3 gene is interpreted as a disease-causing mutation. The variant is found in HCM panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 28, 2024