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NM_016599.5(MYOZ2):c.302C>A (p.Ser101Ter) AND not provided

Germline classification:
Uncertain significance (3 submissions)
Last evaluated:
Sep 7, 2021
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000172063.3

Allele description [Variation Report for NM_016599.5(MYOZ2):c.302C>A (p.Ser101Ter)]

NM_016599.5(MYOZ2):c.302C>A (p.Ser101Ter)

Gene:
MYOZ2:myozenin 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4q26
Genomic location:
Preferred name:
NM_016599.5(MYOZ2):c.302C>A (p.Ser101Ter)
Other names:
p.S101*:TCG>TAG
HGVS:
  • NC_000004.12:g.119158077C>A
  • NG_029747.1:g.27294C>A
  • NM_016599.5:c.302C>AMANE SELECT
  • NP_057683.1:p.Ser101Ter
  • NP_057683.1:p.Ser101Ter
  • LRG_396t1:c.302C>A
  • LRG_396:g.27294C>A
  • LRG_396p1:p.Ser101Ter
  • NC_000004.11:g.120079232C>A
  • NM_016599.3:c.302C>A
  • NM_016599.4:c.302C>A
Protein change:
S101*
Links:
dbSNP: rs138061447
NCBI 1000 Genomes Browser:
rs138061447
Molecular consequence:
  • NM_016599.5:c.302C>A - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000051018Biesecker Lab/Clinical Genomics Section, National Institutes of Health - ClinSeq
criteria provided, single submitter

(Ng et al. (Circ Cardiovasc Genet. 2013))
Uncertain significance
(Jun 24, 2013)
unknownresearch

PubMed (1)
[See all records that cite this PMID]

SCV000250632GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Apr 15, 2014)
germlineclinical testing

Citation Link,

SCV002502307AiLife Diagnostics, AiLife Diagnostics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Sep 7, 2021)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknown1not providednot providednot providednot providedresearch
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Interpreting secondary cardiac disease variants in an exome cohort.

Ng D, Johnston JJ, Teer JK, Singh LN, Peller LC, Wynter JS, Lewis KL, Cooper DN, Stenson PD, Mullikin JC, Biesecker LG; NIH Intramural Sequencing Center (NISC) Comparative Sequencing Program..

Circ Cardiovasc Genet. 2013 Aug;6(4):337-46. doi: 10.1161/CIRCGENETICS.113.000039. Epub 2013 Jul 16.

PubMed [citation]
PMID:
23861362
PMCID:
PMC3887521

The yield of postmortem genetic testing in sudden death cases with structural findings at autopsy.

Lahrouchi N, Raju H, Lodder EM, Papatheodorou S, Miles C, Ware JS, Papadakis M, Tadros R, Cole D, Skinner JR, Crawford J, Love DR, Pua CJ, Soh BY, Bhalshankar JD, Govind R, Tfelt-Hansen J, Winkel BG, van der Werf C, Wijeyeratne YD, Mellor G, Till J, et al.

Eur J Hum Genet. 2020 Jan;28(1):17-22. doi: 10.1038/s41431-019-0500-8. Epub 2019 Sep 18.

PubMed [citation]
PMID:
31534214
PMCID:
PMC6906523
See all PubMed Citations (3)

Details of each submission

From Biesecker Lab/Clinical Genomics Section, National Institutes of Health - ClinSeq, SCV000051018.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot provided1not providednot providednot provided

From GeneDx, SCV000250632.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Ser101Stop (TCG>TAG): c.302 C>A in exon 4 of the MYOZ2 gene (NM_016599.4). A variant of unknown significance has been identified in the MYOZ2 gene. The S101X variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. S101X is predicted to cause loss of normal protein function either by protein truncation or nonsense-mediated mRNA decay. However, the S101X sequence change in the MYOZ2 gene was reported as a variant of unknown significance (Ng et al., 2013). S101X was reported in one individual from 870 participants not selected for a clinical phenotype or family history of arrhythmia or cardiomyopathy, who underwent whole exome sequencing as part of the ClinSeq study (Ng et al., 2013). The authors piloted a method to identify incidental results in cardiomyopathy and arrhythmia-associated alleles and provided interpretation for these variants (Ng et al., 2013). The S101X variant was classified as a variant of unknown significance given that no loss-of-function mutations have been reported in the MYOZ2 gene in association with cardiomyopathy (Ng et al., 2013).Therefore, based on the currently available information, it is unclear whether this variant is a pathogenic mutation or a rare benign variant. This variant was found in CARDIOMYOPATHY

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From AiLife Diagnostics, AiLife Diagnostics, SCV002502307.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: May 1, 2024