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NM_001804.3(CDX1):c.427G>A (p.Gly143Arg) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 5, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000202815.3

Allele description [Variation Report for NM_001804.3(CDX1):c.427G>A (p.Gly143Arg)]

NM_001804.3(CDX1):c.427G>A (p.Gly143Arg)

Gene:
CDX1:caudal type homeobox 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_001804.3(CDX1):c.427G>A (p.Gly143Arg)
HGVS:
  • NC_000005.10:g.150167303G>A
  • NG_046970.1:g.5523G>A
  • NM_001804.3:c.427G>AMANE SELECT
  • NP_001795.2:p.Gly143Arg
  • NC_000005.9:g.149546866G>A
  • NM_001804.2:c.427G>A
Protein change:
G143R
Links:
dbSNP: rs539576362
NCBI 1000 Genomes Browser:
rs539576362
Molecular consequence:
  • NM_001804.3:c.427G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000257898Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia
criteria provided, single submitter

(DGD Variant Analysis Guidelines)		Uncertain significance
(Aug 5, 2015) 		unknownclinical testing

DGD_Variant_Analysis_Guidelines.docx

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genomic Diagnostic Laboratory, Division of Genomic Diagnostics, Children's Hospital of Philadelphia, SCV000257898.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 25, 2024