U.S. flag

An official website of the United States government

NM_004004.6(GJB2):c.299_300del (p.His100fs) AND Rare genetic deafness

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 12, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000211773.12

Allele description [Variation Report for NM_004004.6(GJB2):c.299_300del (p.His100fs)]

NM_004004.6(GJB2):c.299_300del (p.His100fs)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.299_300del (p.His100fs)
HGVS:
  • NC_000013.11:g.20189282_20189283del
  • NG_008358.1:g.8693_8694del
  • NM_004004.6:c.299_300delMANE SELECT
  • NP_003995.2:p.His100fs
  • LRG_1350t1:c.299_300del
  • LRG_1350:g.8693_8694del
  • LRG_1350p1:p.His100fs
  • NC_000013.10:g.20763421_20763422del
  • NC_000013.10:g.20763421_20763422delAT
  • NC_000013.11:g.20189282_20189283delAT
  • NM_004004.5:c.299_300del
  • NM_004004.5:c.299_300delAT
  • NM_004004.6:c.299_300delATMANE SELECT
  • c.299_300delAT
  • p.His100fs
Protein change:
H100fs
Links:
dbSNP: rs111033204
NCBI 1000 Genomes Browser:
rs111033204
Molecular consequence:
  • NM_004004.6:c.299_300del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Rare genetic deafness
Identifiers:
MedGen: C5680250; Orphanet: 96210

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000061497Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Aug 12, 2019)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Connexin26 mutations associated with nonsyndromic hearing loss.

Park HJ, Hahn SH, Chun YM, Park K, Kim HN.

Laryngoscope. 2000 Sep;110(9):1535-8.

PubMed [citation]
PMID:
10983956

Prevalent connexin 26 gene (GJB2) mutations in Japanese.

Abe S, Usami S, Shinkawa H, Kelley PM, Kimberling WJ.

J Med Genet. 2000 Jan;37(1):41-3.

PubMed [citation]
PMID:
10633133
PMCID:
PMC1734448
See all PubMed Citations (7)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000061497.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

The His100fs variant in GJB2 has been previously reported in several individuals with hearing loss who were homozygous or compound heterozygous (Abe 2000, Bayazit 2003, Gabriel 2001, Park 2000, Snoeckx 2005, Wang 2002, Zhang 2010, LMM unpublished data). This variant has also been identified in 0.09% (18/19950) of East Asian chromosomes by gnomAD (http://gnomad.broadinstitute.org). This frameshift variant is predicted to alter the protein’s amino acid sequence beginning at position 100 and lead to a premature termination codon 14 amino acids downstream. This alteration is then predicted to lead to a truncated or absent protein. Loss of function of the GJB2 gene is an established disease mechanism in autosomal recessive hearing loss. In summary, this variant meets criteria to be classified as pathogenic for autosomal recessive hearing loss. ACMG/AMP Criteria applied: PVS1, PM3, PM2_Supporting.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024