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NM_005591.4(MRE11):c.311G>C (p.Ser104Thr) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Mar 16, 2018
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000212556.3

Allele description [Variation Report for NM_005591.4(MRE11):c.311G>C (p.Ser104Thr)]

NM_005591.4(MRE11):c.311G>C (p.Ser104Thr)

Gene:
MRE11:MRE11 homolog, double strand break repair nuclease [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q21
Genomic location:
Preferred name:
NM_005591.4(MRE11):c.311G>C (p.Ser104Thr)
Other names:
p.S104T:AGT>ACT
HGVS:
  • NC_000011.10:g.94485927C>G
  • NG_007261.1:g.12948G>C
  • NM_001330347.2:c.311G>C
  • NM_005590.4:c.311G>C
  • NM_005591.4:c.311G>CMANE SELECT
  • NP_001317276.1:p.Ser104Thr
  • NP_005581.2:p.Ser104Thr
  • NP_005582.1:p.Ser104Thr
  • NP_005582.1:p.Ser104Thr
  • LRG_85t1:c.311G>C
  • LRG_85:g.12948G>C
  • LRG_85p1:p.Ser104Thr
  • NC_000011.9:g.94219093C>G
  • NM_005591.3:c.311G>C
  • p.S104T
Protein change:
S104T
Links:
dbSNP: rs587780140
NCBI 1000 Genomes Browser:
rs587780140
Molecular consequence:
  • NM_001330347.2:c.311G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005590.4:c.311G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005591.4:c.311G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000149825GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Dec 12, 2013)
germlineclinical testing

Citation Link,

SCV000842795Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Uncertain significance
(Mar 16, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From GeneDx, SCV000149825.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

MRE11A, which is involved in DNA damage repair, has been only recently described in association with cancer predisposition and the risks are not well understood. This variant is denoted MRE11A c.311G>C at the cDNA level, p.Ser104Thr (S104T) at the protein level, and results in the change of a Serine to a Threonine (AGT>ACT). This variant has not, to our knowledge, been published in the literature as pathogenic or benign. MRE11A Ser104Thr was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. This variant is a conservative substitution of one neutral polar amino acid for another, altering a position that is well conserved throughout evolution and is located in the a2-b2 loop forming a H-bond that is involved in stabilizing the hMre11 core dimer (Park 2011). In silico analyses are inconsistent with regard to the effect this variant may have on protein structure and function. On a molecular level, the impact of this missense variant on protein structure and function is not known and thus we consider this to be a variant of uncertain significance. Furthermore, based on the currently available information, cancer risks associated with this variant, and the MRE11A gene, remain unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics, SCV000842795.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024