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NM_080680.3(COL11A2):c.688G>T (p.Gly230Trp) AND not specified

Germline classification:
Benign (2 submissions)
Last evaluated:
Aug 3, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000217677.8

Allele description [Variation Report for NM_080680.3(COL11A2):c.688G>T (p.Gly230Trp)]

NM_080680.3(COL11A2):c.688G>T (p.Gly230Trp)

Gene:
COL11A2:collagen type XI alpha 2 chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p21.32
Genomic location:
Preferred name:
NM_080680.3(COL11A2):c.688G>T (p.Gly230Trp)
HGVS:
  • NC_000006.12:g.33186737C>A
  • NG_011589.1:g.10732G>T
  • NM_001163771.2:c.688G>T
  • NM_080679.3:c.688G>T
  • NM_080680.3:c.688G>TMANE SELECT
  • NM_080681.3:c.688G>T
  • NP_001157243.1:p.Gly230Trp
  • NP_542410.2:p.Gly230Trp
  • NP_542411.2:p.Gly230Trp
  • NP_542411.2:p.Gly230Trp
  • NP_542412.2:p.Gly230Trp
  • NC_000006.11:g.33154514C>A
  • NM_001163771.1:c.688G>T
  • NM_080680.2:c.688G>T
Protein change:
G230W
Links:
dbSNP: rs141430703
NCBI 1000 Genomes Browser:
rs141430703
Molecular consequence:
  • NM_001163771.2:c.688G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080679.3:c.688G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080680.3:c.688G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080681.3:c.688G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000268893Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Apr 17, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000343748Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Benign
(Aug 3, 2016)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided22not providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000268893.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

p.Gly230Trp in exon 5A of COL11A2: This variant is not expected to have clinical significance because it has been identified in 0.9% (78/8654) of East Asian chr omosomes by the Exome Aggregation Consortium (ExAC, http://exac.broadinstitute.o rg; dbSNP rs141430703).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided2not provided

From Eurofins Ntd Llc (ga), SCV000343748.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Mar 16, 2024