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NM_000503.6(EYA1):c.-24G>T AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 24, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000218571.4

Allele description [Variation Report for NM_000503.6(EYA1):c.-24G>T]

NM_000503.6(EYA1):c.-24G>T

Gene:
EYA1:EYA transcriptional coactivator and phosphatase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q13.3
Genomic location:
Preferred name:
NM_000503.6(EYA1):c.-24G>T
HGVS:
  • NC_000008.11:g.71356481C>A
  • NG_011735.2:g.10752G>T
  • NG_011735.3:g.196650G>T
  • NM_000503.6:c.-24G>TMANE SELECT
  • NM_001288574.2:c.-24G>T
  • NM_001288575.2:c.-308G>T
  • NM_001370333.1:c.64G>T
  • NM_001370334.1:c.-24G>T
  • NM_001370335.1:c.-24G>T
  • NM_001370336.1:c.64G>T
  • NM_172058.4:c.-24G>T
  • NM_172059.5:c.64G>T
  • NP_001357262.1:p.Ala22Ser
  • NP_001357265.1:p.Ala22Ser
  • NP_742056.2:p.Ala22Ser
  • NC_000008.10:g.72268716C>A
Protein change:
A22S
Links:
dbSNP: rs759264949
NCBI 1000 Genomes Browser:
rs759264949
Molecular consequence:
  • NM_000503.6:c.-24G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001288574.2:c.-24G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001288575.2:c.-308G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001370334.1:c.-24G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001370335.1:c.-24G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_172058.4:c.-24G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001370333.1:c.64G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370336.1:c.64G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172059.5:c.64G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000271774Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Uncertain significance
(Nov 24, 2015)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000271774.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The p.Leu2Phe variant in EYA1 has not been previously reported in individuals wi th hearing loss or in large population studies. Computational prediction tools a nd conservation analysis suggest that the p.Leu2Phe variant may not impact the p rotein, though this information is not predictive enough to rule out pathogenici ty. In summary, the clinical significance of the p.Leu2Phe variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Jan 7, 2023