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NC_012920.1(MT-ND1):m.4135T>C AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 10, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000223794.2

Allele description [Variation Report for NC_012920.1(MT-ND1):m.4135T>C]

NC_012920.1(MT-ND1):m.4135T>C

Gene:
MT-ND1:mitochondrially encoded NADH dehydrogenase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1(MT-ND1):m.4135T>C
HGVS:
NC_012920.1:m.4135T>C
Links:
dbSNP: rs876661355
NCBI 1000 Genomes Browser:
rs876661355
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000280190Stanford Center for Inherited Cardiovascular Disease, Stanford University
no assertion criteria provided
Uncertain significance
(Jun 10, 2015)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided1not providednot providednot providednot providedclinical testing

Details of each submission

From Stanford Center for Inherited Cardiovascular Disease, Stanford University, SCV000280190.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

Note this variant was found in clinical genetic testing performed by one or more labs who may also submit to ClinVar. Thus any internal case data may overlap with the internal case data of other labs. The interpretation reviewed below is that of the Stanford Center for Inherited Cardiovascular Disease. MT-ND1 p.Tyr277His Based on the data reviewed below, we classify this variant as a variant of uncertain significance. The protein product of MT-ND1 is part of complex I in the mitochondrial electron transport chain. This variant has not been reported in Mitomap (www.mitomap.org) as a mutation or a benign polymorphism. It has been reported in the general population at a low frequency: 0/2704 individuals in mtDB (www.genpat.uu.se/mtDB); 0/3735 individuals in MitoWheel (http://mitowheel.org/mitowheel.html). It has been associated with mitochondrial haplogroup NCM at a frequency of 0.6% (1 in 1083 individuals). The clinical significance of this is not known. This is a non-conservative amino acid change at a position that is conserved across species. In silico analysis predicts that it is probably damaging to the protein structure/function.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not providednot providednot provided

Last Updated: May 19, 2024